Pinned Repositories
aind-data-transfer
aind-ng-link
Python package for the generation of neuroglancer links
BaSiCPy
carver
imagej.github.io
GitHub Pages for ImageJ
ImarisWriter
karateclub
A general purpose community detection and network embedding library for research built on NetworkX.
lightsheet-compression-tests
testing compression for lightsheet data
mouselight_toolbox
A Matlab toolbox for doing MouseLight-y things
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
carshadi's Repositories
carshadi/aind-data-transfer
carshadi/aind-ng-link
Python package for the generation of neuroglancer links
carshadi/BaSiCPy
carshadi/carver
carshadi/imagej.github.io
GitHub Pages for ImageJ
carshadi/ImarisWriter
carshadi/karateclub
A general purpose community detection and network embedding library for research built on NetworkX.
carshadi/lightsheet-compression-tests
testing compression for lightsheet data
carshadi/mouselight_toolbox
A Matlab toolbox for doing MouseLight-y things
carshadi/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
carshadi/pyktx
Python module for using KTX format OpenGL texture image files
carshadi/pystripe
An image processing package for removing streaks from SPIM images
carshadi/s3-transfer-tests
carshadi/s3fs
S3 Filesystem
carshadi/sciview
sciview is a tool for visualization and interaction with ND image and mesh data
carshadi/slurm-cluster
Docker local slurm cluster
carshadi/spark-janelia
scripts for using spark on janelia's cluster
carshadi/stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.
carshadi/tiff2octree
a tiff-to-octree converter for dask
carshadi/tiff2octree-singularity
carshadi/tifffile
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
carshadi/tmt
A toolbox of Matlab functions useful for data analysis, especially of electrophysiology data.
carshadi/workstation
Janelia Workstation