carter-allen
Research Scientist at Eli Lilly focused on single cell and spatial biology
Summerville, SC
Pinned Repositories
banyan
Bayesian network models for community detection in spatially resolved single cell data
BayesMSN
R package for fitting Bayesian multivariate mixture models for skewed longitudinal data with intermittent missing observations
betaR
Useful functions for Bayesian analysis of binary data using the beta binomial model
Boone
Tracking the growth of Boone the standard poodle
helpR
A package containing simple functions useful when reporting summary statistics in text, tables, or graphics.
IRISFGM
Development repository for the IRISFGM package for submission purposes
maple
Bayesian Analysis of Multi-Sample Spatial Transcriptomics Data
mlsbm
Efficient estimation for Bayesian Multilevel SBM
normR
Some useful functions for working with Bayesian normal modeling
spruce
Bayesian mutivariate models for clustering spatial transcriptomics data
carter-allen's Repositories
carter-allen/maple
Bayesian Analysis of Multi-Sample Spatial Transcriptomics Data
carter-allen/spruce
Bayesian mutivariate models for clustering spatial transcriptomics data
carter-allen/BayesMSN
R package for fitting Bayesian multivariate mixture models for skewed longitudinal data with intermittent missing observations
carter-allen/helpR
A package containing simple functions useful when reporting summary statistics in text, tables, or graphics.
carter-allen/banyan
Bayesian network models for community detection in spatially resolved single cell data
carter-allen/IRISFGM
Development repository for the IRISFGM package for submission purposes
carter-allen/normR
Some useful functions for working with Bayesian normal modeling
carter-allen/betaR
Useful functions for Bayesian analysis of binary data using the beta binomial model
carter-allen/Boone
Tracking the growth of Boone the standard poodle
carter-allen/mlsbm
Efficient estimation for Bayesian Multilevel SBM
carter-allen/brownbag
Links from DPHS Brownbag talk on Shiny Apps
carter-allen/CongareeTrees
Congaree Big Tree Data
carter-allen/cosR
Small C++ function to quickly compute cosine similarity between two non-zero vectors of equal dimension.
carter-allen/CRT
Fast C++ Generation of Chinese Restaurant Table Random Variables
carter-allen/dpeak
High resolution identification of protein binding sites using PET and SET ChIP-Seq and ChIP-exo data http://dongjunchung.github.io/dpeak/
carter-allen/ENAR
Slides for ENAR 2020 talk
carter-allen/gammaR
Some useful functions for plotting distributions arising in Poisson Gamma models
carter-allen/GGPA
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture (https://github.com/dongjunchung/GGPA)
carter-allen/google-research
Google Research
carter-allen/GPA
GPA: Genetic analysis incorporating Pleiotropy and Annotation http://dongjunchung.github.io/GPA/
carter-allen/GPA_BC
Working repository for preparing GPA for Bioconductor submission
carter-allen/gpaExample
Example data for GPA package https://github.com/dongjunchung/GPA
carter-allen/kappaR
For calculating kappa statistics
carter-allen/methods1-f18
Lab materials for Introduction to Clinical Biostatistics (Methods I) at MUSC, Fall 2018
carter-allen/oddsR
Some useful functions for calculating odds ratios in R.
carter-allen/sbmlhelpers
Helper funtions for fitting Bayesian SBMs with sbmlogit
carter-allen/snowball
Network Augmentation and Community Detection
carter-allen/usefulR
A collection of some useful R functions
carter-allen/VizUM
University of Miami CCS VizUM Competition