Pinned Repositories
AllenBrainAnalyses
Old project: to analyze http://mouse.brain-map.org
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
ayotochtli
biojs
A library of JavaScript components to represent biological data
cb_lab
Under construction
PABLO
Publicly Available Brain image anaLysis tOol kit
ParasoR
Parallel solution for local RNA secondary structure analysis
reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
seqLoGo
SimpleCompiler
write a simple compiler (c like -> x86_64 assembly language) in golang
carushi's Repositories
carushi/ParasoR
Parallel solution for local RNA secondary structure analysis
carushi/reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
carushi/PABLO
Publicly Available Brain image anaLysis tOol kit
carushi/cb_lab
Under construction
carushi/seqLoGo
carushi/SimpleCompiler
write a simple compiler (c like -> x86_64 assembly language) in golang
carushi/AllenBrainAnalyses
Old project: to analyze http://mouse.brain-map.org
carushi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
carushi/ayotochtli
carushi/biojs
A library of JavaScript components to represent biological data
carushi/BUMHMM
BUM-HMM is a statistical modelling pipeline for interpreting high-throughput RNA structure probing data.
carushi/carushi
Config files for my GitHub profile.
carushi/Catactor
Pipeline for meta scATAC-seq analyses
carushi/go-gtk
Go binding for GTK
carushi/GoMADScan
Go-based Modification associated database scanner
carushi/GSEA-InContext
Gene Set Enrichment Analysis in Python
carushi/LassoVariants
Python codes for Lasso feature selection
carushi/LinearRegression-with-numpy
LinearRegression with numpy
carushi/Meta_scATAC_shiny_server
carushi/MetaEnrichmentAnalysis
carushi/mrna-prot
Repository for the mRNA/protein study (Csardi et al. 2015)
carushi/NGS
scripts for NGS
carushi/PROBer
PROBer: A general toolkit for analyzing sequencing-based ‘toeprinting’ assays
carushi/Reimplementation
carushi/resource
carushi/RT_end_counter
Docker image which contains samtools, bedtools2, and RT end counter for high-throughput structure analyses
carushi/sleuth
Differential analysis of RNA-Seq
carushi/template
A template Sphinx repo
carushi/workshop
carushi/yeast_coexp_analysis