carze
Computational biologists. Microbiome, virome, software eng-y stuff. I write bad-looking code so yours looks better.
Ring TherapeuticsBoston
Pinned Repositories
Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
clovr-base
The clovr-base repository is a collection of several key parts of the CloVR VM including the pipelines, software, test suite, and system files needed for the VM to function successfully.
command_line_bootcamp
:computer: command-line bootcamp adventure in your browser
cutadapt
cutadapt removes adapter sequences from sequencing reads
cutlass
An iHMP domain specific API using osdf-python
cv
CV, typesetted in Helvetica Neue, using XeTeX, TikZ and Biblatex
cv-friggeri-x
A LaTeX/XeTeX template based on the famous Friggeri CV
disease-ontology
Tools and source for the Disease Ontology browser web app.
WWARN
WWARN code
XDM-pannal-plugin-repo
Custom XDM plugins by pannal
carze's Repositories
carze/disease-ontology
Tools and source for the Disease Ontology browser web app.
carze/cutadapt
cutadapt removes adapter sequences from sequencing reads
carze/WWARN
WWARN code
carze/XDM-pannal-plugin-repo
Custom XDM plugins by pannal
carze/Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
carze/clovr-base
The clovr-base repository is a collection of several key parts of the CloVR VM including the pipelines, software, test suite, and system files needed for the VM to function successfully.
carze/command_line_bootcamp
:computer: command-line bootcamp adventure in your browser
carze/cutlass
An iHMP domain specific API using osdf-python
carze/cv
CV, typesetted in Helvetica Neue, using XeTeX, TikZ and Biblatex
carze/cv-friggeri-x
A LaTeX/XeTeX template based on the famous Friggeri CV
carze/dbk-tools
Tools for working with Deutsche Bank file formats
carze/dotfiles
Dotfile stuff to make setup on a new machine easy.
carze/ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
carze/friggeri-cv-a4
A4 paper format version of the fancy Friggeri CV LaTex template
carze/osdf-schemas
The OSDF JSON-Schema files for the iHMP project
carze/PandasSchema
A validation library for Pandas data frames using user-friendly schemas
carze/PokemonGo-Map
🌏 Live visualization of all the pokemon in your area... and more!
carze/spacegraphcats
Indexing large assembly graphs -- remember, in space, no one can hear you miao!
carze/swedish-mortality
An interactive website to explore factors that contribute to Swedish Mortality
carze/vappio
Vappio is an API for the creation and manipulation of clusters on a cloud in a platform agnostic way. vappio was originally designed on top of EC2 so in some places it uses EC2 terminology but the functionality is more generic. Vappio works on EC2 and Nimbus based infrastructures.
carze/XDM-carze-plugin-repo
Stab at some XDM plugin creation.
carze/XDM-Plugins
carze/YAMP
YAMP: Yet Another Metagenomic Pipeline