Pinned Repositories
BertOGlyc
Work done as part of a MSc project with Hiren Jitendra Joshi and Ole Winther, using BERT to predict O-GalNAc glycosylation.
borzoi-pytorch
The Borzoi model from Calico, but ported to Pytorch
casblaauw.github.io
My personal website.
enformer_keras
A FastISM-compatible Keras implementation of DeepMind's Enformer model
InteractionVelocity
Work done as part of a MSc project with Kyoung Jae Won, using RCTD and scVelo to map RNA velocities of tissue interaction spaces.
MuDataSeurat
.h5mu files interface for Seurat
nog5-streamlit
NOG5Thesis
Thesis on applying Language Models to human O-GalNAc prediction
phosphocie
phosphocie: create kinase colour representations from phosphosites
protein-language-challenge
Copenhagen Bioinformatics Hackathon 2021 Protein Edition - Protein Language Challenge
casblaauw's Repositories
casblaauw/InteractionVelocity
Work done as part of a MSc project with Kyoung Jae Won, using RCTD and scVelo to map RNA velocities of tissue interaction spaces.
casblaauw/BertOGlyc
Work done as part of a MSc project with Hiren Jitendra Joshi and Ole Winther, using BERT to predict O-GalNAc glycosylation.
casblaauw/borzoi-pytorch
The Borzoi model from Calico, but ported to Pytorch
casblaauw/casblaauw.github.io
My personal website.
casblaauw/enformer_keras
A FastISM-compatible Keras implementation of DeepMind's Enformer model
casblaauw/MuDataSeurat
.h5mu files interface for Seurat
casblaauw/nog5-streamlit
casblaauw/NOG5Thesis
Thesis on applying Language Models to human O-GalNAc prediction
casblaauw/phosphocie
phosphocie: create kinase colour representations from phosphosites
casblaauw/protein-language-challenge
Copenhagen Bioinformatics Hackathon 2021 Protein Edition - Protein Language Challenge
casblaauw/ucie
casblaauw/UU_ADAV_ggplot_project
An animated visualisation of Texas housing prices over time. ggplot2 project for Applied Data Analysis and Visualisation.
casblaauw/UU_ADAV_shiny_project
A Shiny app that models the relationship between different aspects of coffee flavor and overall preference. Hand-in assignment 2 for the course Applied Data Analysis and Visualisation.
casblaauw/UU_bioinfo_course
ipython notebooks for Bachelor course bioinformatics
casblaauw/UU_BSc_thesis
A random forest analysis to link transcriptome dynamics to their genomic regulatory sections. Work done for my Bachelor thesis at Utrecht University.
casblaauw/vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
casblaauw/webex-backup
A tool to create backups of your webex presence.