catalystneuro/neuroconv

[Feature]: Add support for .csv output files from DeepLabCut

Closed this issue · 4 comments

pauladkisson commented

What would you like to see added to NeuroConv?

DeepLabCut optionally exports to .csv instead of .h5 (https://deeplabcut.github.io/DeepLabCut/docs/standardDeepLabCut_UserGuide.html), so DeepLabCutInterface should be able to support both types of outputs.

Is your feature request related to a problem?

No response

Do you have any interest in helping implement the feature?

Yes.

Code of Conduct

h-mayorquin commented

I have not seen data so far that only has the csv but is a good idea to be robust for that case. Should be an easy implementation as well.

Can you get testing data for this?

pauladkisson commented

Yes, the Jadhav Lab data has .csv DLC data. That's how I found out about this issue.

h-mayorquin commented

Are they using only the csv or do they have both csv and h5?

I was asking if we can use our data in our testing suite / gin / s3.

pauladkisson commented

Are they using only the csv or do they have both csv and h5?

Only .csv

Jacob has been cooperative with data sharing with Spikegadgets so we will likely be able to add their data to our gin as well.