Pinned Repositories
cookiecutter-my-lab-to-nwb-template
The standard cookiecutter template for all lab-specific NWB conversions.
ecogVIS
Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.
HDF5Zarr
Reading HDF5 files with Zarr
json-schema-to-dash-forms
JSON schema to Dash forms
lazy_ops
Lazy transposing and slicing of h5py and Zarr Datasets
neuroconv
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
nwb-conversion-tools
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
spike-sorting-hackathon
spikeinterface_cloud
CatalystNeuro's Repositories
catalystneuro/neuroconv
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
catalystneuro/roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
catalystneuro/ontology-matching-service
Ontology matching service based on LLMs for facilitating the extraction of scientific metadata from ontologies
catalystneuro/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
catalystneuro/tqdm_publisher
Subscribe to updates from tqdm progress bars with arbitrary callback functions.
catalystneuro/cookiecutter-my-lab-to-nwb-template
The standard cookiecutter template for all lab-specific NWB conversions.
catalystneuro/example-notebooks
catalystneuro/format-support-table
A summary of format support in the NWB ecosystem
catalystneuro/ndx-fiber-photometry
This is an NWB extension for storing fiber photometry recordings and associated metadata.
catalystneuro/si-dendro-apps
SpikeInterface Apps for Dendro
catalystneuro/stratneuro_2024
Material for StratNeuro 2024 workshop
catalystneuro/vame-desktop
A desktop application for the Variational Animal Motion Encoding project.
catalystneuro/.github
Company-wide documentation of practices, protocols, policies, and processes.
catalystneuro/dicarlo-lab-to-nwb
catalystneuro/dombeck-lab-to-nwb
NWB Conversion project for the Dombeck lab at Northwestern University.
catalystneuro/GuPPy
Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
catalystneuro/higley-lab-to-nwb
NWB Conversion project for the Higley lab
catalystneuro/howe-lab-to-nwb
NWB Conversion project for the Howe lab at Boston University.
catalystneuro/leifer_lab_to_nwb
Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
catalystneuro/lerner-lab-to-nwb
catalystneuro/mousev1-to-nwb
NWB Conversion project for the Adesnik lab at UC Berkeley.
catalystneuro/ndx-extracellular-channels
catalystneuro/ndx-microscopy
catalystneuro/ndx-ophys-devices
This is an NWB extension for storing metadata of devices used in optical experimental setup (microscopy, fiber photometry, optogenetic stimulation etc.)
catalystneuro/ndx-patterned-ogen
patterned (holographic) optogenetic extension to NWB standard
catalystneuro/nelson-lab-to-nwb
catalystneuro/nwbinspector
Tool to help inspect NWB files for compliance with NWB Best Practices
catalystneuro/reimer-arenkiel-lab-to-nwb
Reimer-Arenkiel lab conversion to NWB
catalystneuro/turner-lab-to-nwb
NWB Conversion project for the Turner lab at the University of Pittsburgh.
catalystneuro/wormdatamodel
Data model for whole brain recordings