cathalgking

Bioinformatics (single-cell & Spatial)

Australia

Pinned Repositories

cking-portfolio
Language:HTML0 0 00
SAGC_scRNAseq_workshop
SAGC single-cellRNAseq workshop
Language:Python0 1 02
single-cell-RNA-seq-analysis
simple operations on single-cell-RNA-seq or spatial transcriptomics data
Language:HTML6 1 10
Spatial_Workshop_SAGC
Language:Python0 1 00
SpatialPath
Pathway level activity scoring for spatial omics
Language:R00
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
Language:R225 18 20842
numbat
Haplotype-aware CNV analysis from single-cell RNA-seq
Language:R174 9 19423
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C1.7k 99 1.3k582
seurat
R toolkit for single cell genomics
Language:R2.3k 76 8.1k924
sinto
Tools for single-cell data processing
Language:Python120 2 6325

cathalgking's Repositories

cathalgking/single-cell-RNA-seq-analysis
simple operations on single-cell-RNA-seq or spatial transcriptomics data
Language:HTML6 1 10
cathalgking/cking-portfolio
Language:HTML0 0 00
cathalgking/SAGC_scRNAseq_workshop
SAGC single-cellRNAseq workshop
Language:Python0 1 02
cathalgking/Spatial_Workshop_SAGC
Language:Python0 1 00
cathalgking/SpatialPath
Pathway level activity scoring for spatial omics
Language:R00