cathalgking

Bioinformatics (single-cell & Spatial)

Australia

Pinned Repositories

cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
Language:Python303 7 23356
cking-portfolio
Homepage -> www.cathalgking.com
Language:HTML0 0 00
Random-scripts
Random scripts to handle and process bioinformatic data
Language:R0 1 00
SAGC_scRNAseq_workshop
SAGC single-cellRNAseq workshop
Language:Python0 1 02
single-cell-RNA-seq-analysis
simple operations on single-cell-RNA-seq or spatial transcriptomics data
Language:HTML6 1 10
Spatial_Workshop_SAGC
Language:Python0 1 00
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
Language:R222 18 20143
nichenetr
NicheNet: predict active ligand-target links between interacting cells
Language:R466 14 281115
samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C1.6k 102 1.3k576
seurat
R toolkit for single cell genomics
Language:R2.2k 73 7.9k901

cathalgking's Repositories

cathalgking/single-cell-RNA-seq-analysis
simple operations on single-cell-RNA-seq or spatial transcriptomics data
Language:HTML6 1 10
cathalgking/cking-portfolio
Homepage -> www.cathalgking.com
Language:HTML0 0 00
cathalgking/Random-scripts
Random scripts to handle and process bioinformatic data
Language:R0 1 00
cathalgking/SAGC_scRNAseq_workshop
SAGC single-cellRNAseq workshop
Language:Python0 1 02
cathalgking/Spatial_Workshop_SAGC
Language:Python0 1 00