Pinned Repositories
active_avoidance
Active Avoidance analysis
agency_hackathon
agency_models
Python code for simulations of agency in agent-human interactions
caiman_gui
caiman_toolbox
CaImAn GUI and analysis toolbox
dgp_dlc_assembly
Post inference animal assembly tools
ensemble_toolbox
Calcium imaging and ensemble detection toolbox
gerbil
SLEAP correction pipelines
openneuron
ephys/ophys processing tools
projection_decoder
projection decoer
catubc's Repositories
catubc/gerbil
SLEAP correction pipelines
catubc/projection_decoder
projection decoer
catubc/active_avoidance
Active Avoidance analysis
catubc/agency_hackathon
catubc/agency_models
Python code for simulations of agency in agent-human interactions
catubc/ArtificialIntelligenceEngines
Computer code collated for use with Artificial Intelligence Engines book by JV Stone
catubc/binarize2pcalcium
Binarization pipelines for converting continuous 2P calcium imaging traces into binarized time series
catubc/bmi_tools
bmi tools
catubc/bmigui
bmigui
catubc/catubc.github.io
catubc/CellReg
Registration of cells across sessions.
catubc/deep-reinforcement-learning
Repo for the Deep Reinforcement Learning Nanodegree program
catubc/defisheye
defish
catubc/dlc_toolbox
DLC GUI for correcting traces
catubc/duBro
duBro
catubc/elife_self_init_paper
Files and code for generating manuscript figures
catubc/ephys
ephys tools
catubc/Hopfield-Network
Hopfield network simulation in Python, comparing both asynchronous and synchronous method.
catubc/iob_tools
catubc/irl-maxent
Maximum Entropy and Maximum Causal Entropy Inverse Reinforcement Learning Implementation in Python
catubc/jobcreator
command line tool for automating SLURM job setup and submission
catubc/manifolds
manifolds code
catubc/opencabmi
open source ca bmi
catubc/simba
SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
catubc/sleap_toolbox
sleap toolbox
catubc/spikeextractors
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
catubc/spikeinterface_yass
code that uses spikeinterface to analyze yass results
catubc/spikesorters
Python-based module with spike sorter wrappers and a simple API for running them.
catubc/widefield
widefield_data_analysis
catubc/widefieldPredict
Prediction of future behaviour from widefield [Ca] neural activity