cavenel
Bioimage Analyst at the BioImage Informatics Facility (BIIF - SciLifeLab / NMI)
Uppsala UniversitySweden
Pinned Repositories
CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
devbio-napari
ev3-print3rbot
Python code for the EV3-Print3rbot, based on ev3dev project.
ev3dev-kernel
the ev3dev compatible kernel source ev3dev-rootfs - the ev3dev root file system
ev3dev-lang-python
Pure python bindings for ev3dev
ev3dev.github.io
pretty web page for ev3dev
ev3dev_examples
Examples of program for ev3dev
ev3devKit
programming toolkit for ev3dev
neubias_test
TissUUmaps
TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.
cavenel's Repositories
cavenel/ev3-print3rbot
Python code for the EV3-Print3rbot, based on ev3dev project.
cavenel/ev3dev_examples
Examples of program for ev3dev
cavenel/TissUUmaps
TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.
cavenel/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
cavenel/devbio-napari
cavenel/ev3dev-kernel
the ev3dev compatible kernel source ev3dev-rootfs - the ev3dev root file system
cavenel/ev3dev-lang-python
Pure python bindings for ev3dev
cavenel/ev3dev.github.io
pretty web page for ev3dev
cavenel/ev3devKit
programming toolkit for ev3dev
cavenel/neubias_test
cavenel/NEUBIAS_test-1
cavenel/NoCodeSeg
🔬 Code-free deep segmentation for computational pathology
cavenel/openseadragon
An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.
cavenel/openseadragon-annotations
Draw annotations over deep zoom images
cavenel/p2r
p2r temp
cavenel/pipex
A pipeline to transform images into valuable analysis items
cavenel/pyclesperanto_prototype
http://clesperanto.net
cavenel/screenshots-ci-action
GitHub Action for Web screenshot with different device viewpoint. (PR, Vercel and Netlify Preview, Telegram)
cavenel/sphinx-pages
Github Actions for publishing Sphinx HTML+PDF output to github pages
cavenel/workshop-neural-nets-and-deep-learning
NBIS workshop in Neural Nets and Deep Learning
cavenel/Xenium_benchmarking
Code used to benchmark Xenium