cbg-ethz/PYggdrasil

Issues

• Update ETH Collection Link to Thesis

  #201 opened a year ago by gordonkoehn
  0

• Fix Pyright Version

  #199 opened a year ago by gordonkoehn
  0

• Fix typo in ReadMe

  #197 opened a year ago by gordonkoehn
  0

• First Release

  #192 opened a year ago by gordonkoehn
  3

• Enhance Documentation

  #191 opened a year ago by gordonkoehn
  0

• Roadmap to Real-World Data Usage

  #194 opened a year ago by gordonkoehn
  0

• Add True Tree Log-Prob as Horizontal Line to MARK02

  #178 opened a year ago by gordonkoehn
  1

• Generate Documentation

  #185 opened a year ago by gordonkoehn
  0

• Refine Graphics

  #183 opened a year ago by gordonkoehn
  0

• Fix PyRight issue - built failing.

  #180 opened a year ago by gordonkoehn
  0

• Get SCITE Most-Likely Tree

  #141 opened a year ago by gordonkoehn
  10

• Refine MARK03 visuals

  #173 opened a year ago by gordonkoehn
  0

• Meeting notes from August 9th

  #145 opened a year ago by pawel-czyz
  4

• Add Investigation MARK05 - Tree Distribution DL/AD

  #162 opened a year ago by gordonkoehn
  1

• Fix Position of Legend of MARK02 plots

  #159 opened a year ago by gordonkoehn
  1

• Add Gelman-Rubin Statistics

  #161 opened a year ago by gordonkoehn
  0

• Documentation: yg.tree_inference._logprob_validator // test_inspect_logs_of_logprob

  #154 opened a year ago by gordonkoehn
  0

• Documentation: log_probability_validator2

  #153 opened a year ago by gordonkoehn
  0

• Remove snakefmt footprints in code

  #135 opened a year ago by gordonkoehn
  1

• Refine Visuals MARK03 - make HUNTRESS line non-transparent.

  #144 opened a year ago by gordonkoehn
  0

• Clean up MCMC Logging

  #138 opened a year ago by gordonkoehn
  0

• Parallelize distance calculation

  #142 opened a year ago by gordonkoehn
  3

• Migrate Tree Inference Snakemake Rules from scripts to run directive

  #108 opened 2 years ago by gordonkoehn
  0

• MARK02 - Convergence issues

  #76 opened a year ago by gordonkoehn
  3

• MARK03 - Better Initialisation Strategies

  #75 opened a year ago by gordonkoehn
  3

• MARK01: How well does HUNTRESS work?

  #73 opened a year ago by gordonkoehn
  3

• Advanced Metric Calculator Classes

  #87 opened a year ago by gordonkoehn
  1

• Clean up experimental workflow Mark03 - repeated plotting code block.

  #121 opened a year ago by gordonkoehn
  1

• Implement more Tree Metrics

  #107 opened a year ago by gordonkoehn
  3

• Add different-lineages (DL) accuracy

  #119 opened a year ago by gordonkoehn
  0

• Integrate Original HUNTRESS code

  #130 opened a year ago by gordonkoehn
  1

• Revisie Plots MARK01 - combine to overlapping histograms

  #133 opened a year ago by gordonkoehn
  0

• Mark03 Visualization Revision

  #126 opened a year ago by gordonkoehn
  0

• Switch/Update to other HUNTRESS Implementation

  #127 opened a year ago by gordonkoehn
  5

• Up the resources for HUNTRESS

  #122 opened a year ago by gordonkoehn
  1

• Implement MAKR03 Worflow

  #97 opened a year ago by gordonkoehn
  1

• Test MARK03

  #98 opened a year ago by gordonkoehn
  0

• Run MARK03

  #99 opened a year ago by gordonkoehn
  0

• Run MARK02

  #96 opened a year ago by gordonkoehn
  0

• Add Snakemake Format Checker

  #81 opened a year ago by gordonkoehn
  2

• Test MARK02

  #95 opened 2 years ago by gordonkoehn
  0

• Implement MARK02 snakemake Workflow

  #94 opened 2 years ago by gordonkoehn
  0

• Division by Zero in scphylo ancestor-descendant distance

  #89 opened 2 years ago by gordonkoehn
  2

• Run MARK01

  #93 opened 2 years ago by gordonkoehn
  1

• Test MARK01 Snakemake Workflow

  #92 opened 2 years ago by gordonkoehn
  0

• Implement MARK01 Snakemake Workflow

  #91 opened 2 years ago by gordonkoehn
  0

• Implement Full Snakemake

  #77 opened 2 years ago by gordonkoehn
  0

• Revise Visualisation / Add Script

  #72 opened 2 years ago by gordonkoehn
  0

• Implement Distance Utilities

  #74 opened 2 years ago by gordonkoehn
  2

• Investigating Bug - Tree breaking apart 2

  #83 opened 2 years ago by gordonkoehn
  1