cbiagii
Computational Postdoc at Dana-Farber Cancer Institute/Harvard Medical School | PhD in Genetics | Single-cell analysis
Dana-Farber Cancer InstituteBoston
Pinned Repositories
bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
cbiagii
cbiagii.github.io
CeTF
Repository for R package with an implementation of PCIT and RIF algorthms.
CeTFDocker
Docker image for an implementation of PCIT and RIF algorthms in R
cvbioinfo2020
M3K-docs
MAGIC
Docker image for MAGIC (Markov Affinity-based Graph Imputation of Cells)
scmatch
Docker image for scMatch: a single-cell gene expression profile annotation tool using reference datasets
scrnaseq-bit
A docker image with R packages to analyze Single-Cell RNA-Seq data
cbiagii's Repositories
cbiagii/CeTF
Repository for R package with an implementation of PCIT and RIF algorthms.
cbiagii/cvbioinfo2020
cbiagii/scrnaseq-bit
A docker image with R packages to analyze Single-Cell RNA-Seq data
cbiagii/scmatch
Docker image for scMatch: a single-cell gene expression profile annotation tool using reference datasets
cbiagii/bioinformatics-one-liners
Bioinformatics one liners from Ming Tang
cbiagii/cbiagii
cbiagii/cbiagii.github.io
cbiagii/CeTFDocker
Docker image for an implementation of PCIT and RIF algorthms in R
cbiagii/M3K-docs
cbiagii/MAGIC
Docker image for MAGIC (Markov Affinity-based Graph Imputation of Cells)
cbiagii/Pancreas_ductal_scRNAseq
The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche
cbiagii/presto
Fast Wilcoxon and auROC
cbiagii/scclusteval
Single Cell Cluster Evaluation
cbiagii/scvelo
RNA Velocity generalized through dynamical modeling
cbiagii/shiny-bioinformatics
http://tinyurl.com/cruk-shiny
cbiagii/snRNAseq_adipocyte
The following repository contains code for all scRNAseq analysis and visualization performed in the paper: "Multidimensional Single-Nuclei RNA-Seq Reconstruction of Adipose Tissue Reveals Mature Adipocyte Plasticity Underlying Thermogenic Response
cbiagii/tactile
Tactile is a Jekyll theme for GitHub Pages
cbiagii/target-prediction
A docker image with tools for predicting lncRNA and miRNA targets
cbiagii/velocyto.R
RNA velocity estimation in R