cbirchsy

chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

DeepCE

A deep learning framework for high-throughput mechanism-driven phenotype screening

DeepCOP

DeepCOP - Deep Learning-Based Approach to Predict Gene Regulating Effects of Small Molecules

DNABERT-GenomicBenchmarks

genomic_benchmarks

Benchmarks for classification of genomic sequences

HBSM-4Tops-GNN-Legacy

HEP-GNN

hyena-dna

Implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

PDGrapher

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

PerturbNet

PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

cbirchsy/DNABERT-GenomicBenchmarks

cbirchsy/chemCPA

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

cbirchsy/DeepCE

A deep learning framework for high-throughput mechanism-driven phenotype screening

cbirchsy/DeepCOP

DeepCOP - Deep Learning-Based Approach to Predict Gene Regulating Effects of Small Molecules

cbirchsy/genomic_benchmarks

Benchmarks for classification of genomic sequences

cbirchsy/HBSM-4Tops-GNN-Legacy

cbirchsy/HEP-GNN

cbirchsy/hyena-dna

Implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

cbirchsy/PDGrapher

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

cbirchsy/PerturbNet

PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

cbirchsy/scFoundation

cbirchsy/scGPT