Pinned Repositories
ndn-k8s
A simple Kubernetes deployment of a Name-Defined Networking(NDN) container.
gene-oracle-docker
Gene Oracle dockerized, for running across Kubernertes.
kinc-k8s-demo
A demo/workshop for using a series of applications to create a Kubernetes cluster and run a genomics workflow.
fdt-docker
Dockerfile for Fast Data Transfer Tool: https://fast-data-transfer.github.io/
gpn-workshop
ndn-dpdk-k8s
ndn-tools-docker
Dockerized tools for Named Data Networking: https://github.com/susmit85/ndn-tools
nextflow-stress-test
Dummy pipeline to shorten debug time for more complex pipelines.
POWER8-GEM
An adaptation of the PBS-GEM for use with IBM's POWER8 architecture.
builderdash
Builderdash is a cross cloud build system for cloud images
cbmckni's Repositories
cbmckni/ood-code-server
cbmckni/builderdash
Builderdash is a cross cloud build system for cloud images
cbmckni/pvc-data-loader
cbmckni/ndn-k8s
A simple Kubernetes deployment of a Name-Defined Networking(NDN) container.
cbmckni/ndn-dpdk-k8s
cbmckni/hicn-genomics
Compiled, organized, and documented scripts/tools for pulling and publishing data via hICN. Included is a biodata case study focused around 3000+ indexed genomes.
cbmckni/sriov-network-device-plugin
SRIOV network device plugin for Kubernetes
cbmckni/ndn-tools-docker
Dockerized tools for Named Data Networking: https://github.com/susmit85/ndn-tools
cbmckni/gpn-workshop
cbmckni/kinc-k8s-demo
A demo/workshop for using a series of applications to create a Kubernetes cluster and run a genomics workflow.
cbmckni/fdt-docker
Dockerfile for Fast Data Transfer Tool: https://fast-data-transfer.github.io/
cbmckni/GEMmaker
A NextFlow workflow for converting a set of SRA files to a set of Gene Expression Vectors (GEV)
cbmckni/nextflow-stress-test
Dummy pipeline to shorten debug time for more complex pipelines.
cbmckni/kinc-nf-demo
KINC-NF demo for Kubernetes
cbmckni/KINC-nf
Nextflow pipeline for KINC
cbmckni/nextflow-api
cbmckni/slate-catalog
SLATE application catalog based on Helm
cbmckni/DriverRewardsMobile
Driver Rewards App
cbmckni/palmetto-log-notebook
Notebook for analyzing Palmetto GPU logs.
cbmckni/DCBLAST
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
cbmckni/TigerOptimizer
A script that pulls grade distributions from Clemson's Tiger Grader for easy schedule optimization!
cbmckni/gene-oracle-docker
Gene Oracle dockerized, for running across Kubernertes.
cbmckni/Nextflow-KINC
***WORK IN PROGRESS*** Will be a KINC as a Nextflow workflow.
cbmckni/slurmflow
A collection of Docker containers for setting up a Slurm-based cluster, configured to run Nextflow workflows.
cbmckni/Threaded-Merge-Sort-C
A threaded merge sort program coded in C.
cbmckni/POWER8-GEM
An adaptation of the PBS-GEM for use with IBM's POWER8 architecture.
cbmckni/Mini-DFA
Mini-DFA that produces data flow analysis for MIPS instructions.
cbmckni/SimpleCPU
A simple CPU simulator.
cbmckni/s3
Minimal Amazon S3 Client Docker Container