You must create a new conda environment with the following command in Anaconda Prompt:
conda env create --file environment.yml
The previous command will create an environment with all the dependencies needed to run the code.
Once the environment is created, you can activate it in the Anaconda Prompt with:
conda activate pept_seq
All the possible settings are in one settings.py file.
There's a Jupyter Notebook example with how to use the code.
There's a new and rough Jupyter Notebook with an example usage of the new function send_sequence_expert
.