Python-side access to PPI data from Gygi lab
If you use the BioPlexPy package in published research, please cite:
Ludwig Geistlinger, Roger Vargas Jr, Tyrone Lee, Joshua Pan, Edward Huttlin, Robert Gentleman (2023) BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions. Bioinformatics. doi: 10.1093/bioinformatics/btad091.
The package can be installed through pypi or through github
pip install bioplexpy
or
pip install git+https://github.com/ccb-hms/BioPlexPy.git#egg=BioPlexPy
See the BioPlex examples notebook for basic usage and how to obtain BioPlex datasets.
https://bioplexpy.readthedocs.io/en/latest/
python -m doctest BioPlexPy/to run the respective test for the file Warning: By default, doctests will not print anything if tests are successful. Add the-voption to print verbose output.