ccb-hms/ontology-mapper

Issues

• Allow input of custom API parameters to Zooma mapper

  #9 opened 3 years ago by rsgoncalves
  0

• Add support to output mappings in SSSOM format

  #10 opened 7 months ago by rsgoncalves
  0

• Add support to output provenance information (tool version, options, environment, etc)

  #11 opened 2 years ago by rsgoncalves
  1

• Better handling of default parameter values

  #7 opened 7 months ago by rsgoncalves
  0

• Generate ontology term graphs for all terms

  #12 opened 3 years ago by rsgoncalves
  0

• Deeper integration with the Bioregistry

  #27 opened 2 years ago by cthoyt
  3

• Missing file: unstruct_terms.txt

  #30 opened 2 years ago by simonmoedinger
  1

• map_terms returns results with score < min_score

  #32 opened 2 years ago by nleguillarme
  2

• repeated queries reload from cache

  #41 opened a year ago by vjcitn
  3

• Update to newer pandas version

  #56 opened 6 months ago by nleguillarme
  1

• Mapping Key Error when all word results below the min_score

  #61 opened 5 months ago by KennyWu
  1

• Possible float value in EFO

  #49 opened 7 months ago by masarunakajima
  3

• document similarity scores?

  #43 opened 7 months ago by vjcitn
  1

• Add support for scalable generation of BioBERT embeddings

  #15 opened 7 months ago by rsgoncalves
  0

• `t2t._filter_mappings()` function to obtain top-X mappings should be optimized

  #45 opened 10 months ago by rsgoncalves
  1

• Add support for properties

  #29 opened 2 years ago by nleguillarme
  5

• Add support to specify what mapping method should be used

  #14 opened 3 years ago by rsgoncalves
  0

• Exclude ontology IRI from collected terms when term-collection is targeted at specific base IRIs

  #8 opened 3 years ago by rsgoncalves
  0

• Add interface to map text using BioPortal Annotator

  #6 opened 3 years ago by rsgoncalves
  0

• Add interface to map text using Zooma

  #5 opened 3 years ago by rsgoncalves
  0

• Ontology term graph representation should not contain duplicate nodes or edges

  #4 opened 3 years ago by rsgoncalves
  1

• Add requirements file with library dependencies

  #2 opened 3 years ago by rsgoncalves
  0

• Add support to limit search based on a white-list of base IRIs

  #1 opened 3 years ago by rsgoncalves
  0

• Add support to obtain a graph of the neighborhood (e.g. children and parents) of an ontology term

  #3 opened 3 years ago by rsgoncalves
  0