CompBio Connect

Materials for Berkeley Connect in Computational Biology.

Metagenomics tutorial (Fa22, week of Oct 17 activity)

Some notes:

Metadata pre-filtered to only autoFMT samples.
ASV table and feature table already pre-filtered to autoFMT study, excluding below-level taxonomic assignments and low-frequency ASVs.
filtered-table.qza corresponds to filtered-table-4.qza from the QIIME2 tutorial linked above.
filtered-sequences.qza corresponds to filtered-sequences-2.qza from the QIIME2 tutorial linked above.
In the future, I would prefer to use the Silva specialized/weighted classifier, but it's rather large and would increase the runtime. On the off chance that Colab gives more compute resources in the future, linked here.