cchen22

cchen22's Stars

• geekan/MetaGPT

  🌟 The Multi-Agent Framework: First AI Software Company, Towards Natural Language Programming

  Language:Python46.2k5.5k

• netZoo/netbooks

  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..

  Language:Jupyter Notebook3923

• TencentAILabHealthcare/scTranslator

  Language:Jupyter Notebook336

• broadinstitute/ssGSEA2.0

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R25879

• nicolerg/ssGSEA2

  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

  Language:R83

• getzlab/CLUMPS-PTM

  CLUMPS adapted to post-translational modifications.

  Language:Python8

• getzlab/CPTAC_PanCan_PTM_2023

  Language:Jupyter Notebook141

• opendilab/LLMRiddles

  Open-Source Reproduction/Demo of the LLM Riddles Game

  Language:Python53237

• google-research/discs

  DISCS: The code base for the Benchmark for Discrete Sampling

  Language:Python498

• Murali-group/Beeline

  BEELINE: evaluation of algorithms for gene regulatory network inference

  Language:Python17853

• BasisResearch/chirho

  An experimental language for causal reasoning

  Language:Python17612

• OmicsML/awesome-deep-learning-single-cell-papers

  71092

• vandijklab/cell2sentence-ft

  Cell2Sentence turns scRNA-seq data into text for LLM training.

  Language:Python8414

• xCompass-AI/GeneCompass

  GeneCompass

  Language:Python697

• campbio/celda

  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

  Language:R14827

• QuackenbushLab/NetworkDataCompanion

  An R library of utilities for performing analyses on TCGA and GTEx data using the Network Zoo

  Language:HTML4

• LeonSong1995/MeDuSA

  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.

  Language:R403

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R39757

• dinaghiassian/DIAMOnD

  DIseAse MODule identification algorithim

  Language:Python1927

• smiles724/MatchExplainer

  9

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook52065

• kenjihiranabe/The-Art-of-Linear-Algebra

  Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

  Language:PostScript18.3k2.2k

• dviraran/xCell

  Cell types enrichment analysis

  Language:HTML19062

• bnusss/2023-Big-Data-Driven-Artificial-Intelligence

  Language:Jupyter Notebook5216

• netZoo/netZooR

  netZooR is a network biology package implemented in R.

  Language:R10539

• cloudyr/aws.s3

  Amazon Simple Storage Service (S3) API Client

  Language:R382148

• JushBJJ/Mr.-Ranedeer-AI-Tutor

  A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.

  29.1k3.3k

• deepppl/stan-num-pyro

  Python interface for the Stan to (Num)Pyro compiler.

  Language:Python132

• bowang-lab/scGPT

  Language:Jupyter Notebook1.1k221

• mdozmorov/scRNA-seq_notes

  A list of scRNA-seq analysis tools

  Language:R646149