ccmbioinfo/stager
Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.
TypeScript
Issues
- 1
Multi-family analyses
#1158 opened by Madelinehazel - 4
Read job status from Slurm, move BackgroundScheduler to gunicorn master process
#1135 opened by kevinlul - 0
Migrate to MUI 5.0
#1114 opened by kevinlul - 2
The long-coveted Pipeline automation
#1055 opened by kevinlul - 1
Refactor DataEntryTable
#1079 opened by kevinlul - 0
- 0
Flask/DB: Add token-based authentication
#891 opened by cklamann - 0
- 0
- 0
- 0
Migrate to React 18
#1115 opened by kevinlul - 0
Bug in dataset modal for datasets of type RES
#1100 opened by jennyziyi-xu - 0
Migrate to react-router-dom v6
#1101 opened by kevinlul - 0
CI: remove custom yarn caching workflow steps
#1069 opened by kevinlul - 0
- 0
Expose delete button for analyses to admins
#1051 opened by kevinlul - 1
Add Datasets: show "Candidate genes" field automatically for RNAseq (RRS) datasets
#1052 opened by kevinlul - 0
- 1
Flask: Look into alternatives for linked file query
#1023 opened by hannahle - 1
- 1
Flask: Decrease verbosity of logs
#905 opened by cklamann - 0
- 2
Flask: post analysis metadata to PhenoTips
#949 opened by cklamann - 0
Handle NetworkError from the initial fetch
#984 opened by kevinlul - 0
/api/unlinked prefix query is not working correctly, only returns success on exact match
#1013 opened by kevinlul - 1
Switch to Traefik in the multitenant deployment
#976 opened by kevinlul - 1
- 1
Slurm integration: step 1
#985 opened by kevinlul - 0
Vary MinIO URL used on the frontend between tenants
#981 opened by kevinlul - 1
Minio/Flask: payload from `unlinked` very large
#953 opened by cklamann - 4
Flask: remove pandas dependency
#914 opened by kevinlul - 2
- 2
SQLAlchemy: Upgrade to version 1.4
#956 opened by jennyziyi-xu - 4
Epic: CCM deployment
#909 opened by kevinlul - 1
Flask: email alerts for analysis requests
#935 opened by cklamann - 2
Flask/DevOps: Intermittent outages
#950 opened by cklamann - 0
React: Configure login screen and dynamic endpoint selection to support multiple backends
#908 opened by cklamann - 0
- 8
OIDC: Research implementation details
#936 opened by cklamann - 0
React: Fix Analyses Component Part II.
#944 opened by jennyziyi-xu - 0
React/Flask: Fix Analyses component
#939 opened by jennyziyi-xu - 0
Flask: check for duplicate datasets
#942 opened by cklamann - 0
React / Flask: Synchronize data types between the Dataset and Participant modals
#937 opened by jennyziyi-xu - 0
VSCode: standardize debugger implementation
#907 opened by cklamann - 0
Flask: Only change "Updated" timestamp in Participant modal when necessary.
#928 opened by jennyziyi-xu - 0
React: Show a loading modal when the modal is opened or updated upon saving changes.
#913 opened by jennyziyi-xu - 0
- 3
Flask: Error alerts
#906 opened by cklamann - 0
Bug: FileLinkingComponent options dropdown doesn't show all available options.
#897 opened by hannahle - 0
React: Consider disabling the windowFetchOnFocus so page doesn't randomly refreshes every 1 minute
#912 opened by hannahle