Pinned Repositories
2018-03-06-stanford
2018-03-29-stanford-git
Resources for the Git portion of the 2018-03-29-stanford Software Carpentry workshop.
CancerData
cdeboever3.github.io
Personal website.
cdpipelines
Analysis pipelines.
cdpybio
Various bioinformatics scripts that don't need their own repositories.
CSE280a_winter2012
Project for CSE280a, winter 2012
deboever-sf3b1-2015
Code for reproducing SF3B1 study.
sj2psi
Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
TCGA-1
Forked version of the code for theandygross's paper so I can use some of the processing code.
cdeboever3's Repositories
cdeboever3/deboever-sf3b1-2015
Code for reproducing SF3B1 study.
cdeboever3/cdpipelines
Analysis pipelines.
cdeboever3/cdpybio
Various bioinformatics scripts that don't need their own repositories.
cdeboever3/CSE280a_winter2012
Project for CSE280a, winter 2012
cdeboever3/sj2psi
Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores
cdeboever3/TCGA-1
Forked version of the code for theandygross's paper so I can use some of the processing code.
cdeboever3/2018-03-06-stanford
cdeboever3/2018-03-29-stanford-git
Resources for the Git portion of the 2018-03-29-stanford Software Carpentry workshop.
cdeboever3/CancerData
cdeboever3/cdeboever3.github.io
Personal website.
cdeboever3/dotfiles
cdeboever3/dotvim
Vimconfig files
cdeboever3/figshare
Command line client for figshare
cdeboever3/GeneticsDesign
Forked from a GitHub copy of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GeneticsDesign.html
cdeboever3/goshifter
GoShifter
cdeboever3/gtex_comparison
Comparison of transcriptome quantification methods for GTEX samples.
cdeboever3/guitar-chord-quizzer
A simple command line guitar chord quizzer.
cdeboever3/postdoc-planning
A collection of (hopefully useful) information for planning a post doc
cdeboever3/pptmut
Research project.
cdeboever3/pyencodetools
Python wrapper for ENCODE (Encyclopedia of DNA Elements) API and tools for working with the data.
cdeboever3/svm-bpfinder
A tool for mammalian U2 branch point prediction.
cdeboever3/swc-stanford-20180329
cdeboever3/WASP
WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
cdeboever3/wrangling-genomics
Lesson for wrangling genomics data