Code for the Programming Bootcamp
Data and commands are adapted from here
Steps to get things to work
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Log into Tombo and create/move to a folder in
/work/scratch/
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Clone repo with
git clone https://github.com/oist/bootcamp.git
(note the use of https) thencd bootcamp/BLAST
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Create the BLAST database:
makeblastdb -in data/database/Refsoil16s.fa -dbtype nucl -out data/database/My16sAmplicon
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Run
module load python/3.5.2
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Run
python3 main.py
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Run
sbatch data/blastjob.slurm
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Run
python3 analysis.py