error in the usage of the kimono function
Closed this issue · 6 comments
I am trying to use the kimono function for my analysis, and I am getting an error. Even using this function for the tutorial gives the same error below.
Error :
Error in [.data.table(filter(result, idx_row), , idx_col) : j (the 2nd argument inside [...]) is a single symbol but column name 'idx_col' is not found. Perhaps you intended DT[, ..idx_col]. This difference to data.frame is deliberate and explained in FAQ 1.1.
What can I do? I have tried all possible options but still getting the same error.
Hi @BrightGuru, could you give us more information about your session? you could use 'sessionInfo()' cmd in R.
R version 4.1.3 (2022-03-10)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: Rocky Linux 8.5 (Green Obsidian)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblas-r0.3.12.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] DT_0.21 cowplot_1.1.1 kimono_2.0.1.0006 impute_1.68.0 devtools_2.4.3 usethis_2.1.5
[7] hmlasso_0.0.1 checkmate_2.1.0 miselect_0.9.0 mice_3.14.0 forcats_0.5.1 stringr_1.4.0
[13] purrr_0.3.4 readr_2.1.2 tidyr_1.2.0 tibble_3.1.7 tidyverse_1.3.1 ggplot2_3.3.6
[19] dplyr_1.0.9 doSNOW_1.0.20 snow_0.4-4 iterators_1.0.14 foreach_1.5.2 oem_2.0.10
[25] bigmemory_4.6.1 igraph_1.3.1 data.table_1.14.2
loaded via a namespace (and not attached):
[1] fs_1.5.2 lubridate_1.8.0 httr_1.4.3 rprojroot_2.0.3 tools_4.1.3
[6] backports_1.4.1 utf8_1.2.2 R6_2.5.1 DBI_1.1.2 colorspace_2.0-3
[11] withr_2.5.0 tidyselect_1.1.2 prettyunits_1.1.1 processx_3.5.3 curl_4.3.2
[16] compiler_4.1.3 cli_3.3.0 rvest_1.0.2 xml2_1.3.3 desc_1.4.1
[21] scales_1.2.0 callr_3.7.0 digest_0.6.29 htmltools_0.5.2 pkgconfig_2.0.3
[26] sessioninfo_1.2.2 dbplyr_2.1.1 fastmap_1.1.0 htmlwidgets_1.5.4 rlang_1.0.2
[31] readxl_1.4.0 rstudioapi_0.13 generics_0.1.2 jsonlite_1.8.0 magrittr_2.0.3
[36] Matrix_1.4-0 Rcpp_1.0.8.3 munsell_0.5.0 fansi_1.0.3 lifecycle_1.0.1
[41] stringi_1.7.6 brio_1.1.3 pkgbuild_1.3.1 grid_4.1.3 parallel_4.1.3
[46] bigmemory.sri_0.1.3 crayon_1.5.1 lattice_0.20-45 haven_2.5.0 hms_1.1.1
[51] ps_1.7.0 pillar_1.7.0 uuid_1.1-0 codetools_0.2-18 pkgload_1.2.4
[56] reprex_2.0.1 glue_1.6.2 remotes_2.4.2 BiocManager_1.30.17 modelr_0.1.8
[61] vctrs_0.4.1 tzdb_0.3.0 testthat_3.1.4 cellranger_1.1.0 gtable_0.3.0
[66] assertthat_0.2.1 cachem_1.0.6 broom_0.8.0 RSpectra_0.16-1 memoise_2.0.1
[71] ellipsis_0.3.2
@00chris00 That's my session info
@00chris00 still waiting for your response
@BrightGuru, thanks a lot for bringing up this issue; sorry it took a bit. @jdhenaos found the bug and is currently fixing it. Please bear with us :)
Deatr @BrightGuru
Thanks for your patience.
I already fixed the bug according the error message you provided to us.
Please, feel free to install the new version, and run again your code.
If any problem persists. Please, let me know to solve them as soon as possible.
Regards,
Juan
Deatr @BrightGuru
Thanks for your patience.
I already fixed the bug according the error message you provided to us.
Please, feel free to install the new version, and run again your code.
If any problem persists. Please, let me know to solve them as soon as possible.
Regards,
Juan
Thank you. it's working fine now.