ceromova

ceromova's Stars

• broadinstitute/gatk-sv

  A structural variation pipeline for short-read sequencing

  Language:Python17171

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k591

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java980369

• mgvizapps/SignalSync

  Language:JavaScript1

• quinlan-lab/applied-computational-genomics

  Applied Computational Genomics Course at UU: Spring 2020

  Language:HTML943210

• CebolaLab/RNA-seq

  Step-by-step analysis pipeline for RNA-seq data

  Language:Shell6919

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL20296

• jmjuanes/folio

  📜 A digital whiteboard for sketching, annotating and prototyping

  Language:JavaScript183

• jmjuanes/icons

  🎨 An open source and hand-crafted SVG icons collection

  Language:JavaScript4

• jmjuanes/lowcss

  🧰 A low-level functional CSS toolkit

  Language:SCSS4

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim698100

• rstudio/gt

  Easily generate information-rich, publication-quality tables from R

  Language:R2k207

• jtamames/SqueezeMeta

  A complete pipeline for metagenomic analysis

  Language:C37980

• gatk-workflows/gatk4-exome-analysis-pipeline

  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.

  Language:wdl5041

• usadellab/Trimmomatic

  Language:Java22071

• genomicsclass/labs

  Rmd source files for the HarvardX series PH525x

  Language:R2k1.9k

• afuentri/QC

  Language:Python2

• Boyle-Lab/Blacklist

  Application for making ENCODE Blacklists

  Language:C++26738

• RealTimeGenomics/rtg-tools

  RTG Tools: Utilities for accurate VCF comparison and manipulation

  Language:Java29650

• ccsosa/GOCompare

  This is an R package designed to analyze functional enrichment results between two species (A list of genes and their orthologues)

  Language:R91

• adlape95/Spaghetti

  Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing

  Language:Python156

• onceupon/Bash-Oneliner

  A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.

  10.2k623

• rougier/scientific-visualization-book

  An open access book on scientific visualization using python and matplotlib

  Language:Python10.7k991

• saezlab/ShinyFUNKI

  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phosphoproteomic and metabolomic datasets.

  Language:R131

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k333

• grev-uv/hpg-methyl

  An ultrafast and highly sensitive Next-Generation Sequencing (NGS) read mapper and methylation extractor.

  Language:C82