Pinned Repositories
CERR
Matlab/Octave based platform for Radiological Research.
CT_HeadAndNeck_OARs
Pre-trained models for auto-segmentation of OARs on head & neck CT scans.
CT_HeartSubstruct_SMIT
Cardiac sub-structure segmentation using the SMIT model
CT_HN_SMIT
CT_Lung_SMIT
CT_LungOAR_incrMRRN
Pre-trained model for auto-segmentation of OARs on lung CT scans.
CT_SwallowingAndChewing_DeepLabV3
dl_segmentation
Wrappers for deep-learning based segmentation models and network wrights
pyCERR
Computational Environment for Radiological Research
pyCERR-Notebooks
cerr's Repositories
cerr/CERR
Matlab/Octave based platform for Radiological Research.
cerr/pyCERR
Computational Environment for Radiological Research
cerr/CT_SwallowingAndChewing_DeepLabV3
cerr/pyCERR-Notebooks
cerr/dl_segmentation
Wrappers for deep-learning based segmentation models and network wrights
cerr/CT_HeadAndNeck_OARs
Pre-trained models for auto-segmentation of OARs on head & neck CT scans.
cerr/autoseg_container_boilerplate
Boilerplate example code for adapting home-brewed deep learning models to use with the CERR Auto-Segmentation Pipeline.
cerr/cerr-docker
Run the Octave-CERR implementation in a docker container
cerr/CT_HeartSubstruct_SMIT
Cardiac sub-structure segmentation using the SMIT model
cerr/CT_HN_SMIT
cerr/CT_Lung_SMIT
cerr/CT_LungOAR_incrMRRN
Pre-trained model for auto-segmentation of OARs on lung CT scans.
cerr/MSK_MedPhys_Biomed
cerr/octave-colab
cerr/slicerr
cerr/stratis
Workflows for analysis of imaging and rt-dose datasets
cerr/wiki-images
cerr/CT_cardiac_structures_deeplab
cerr/CT_WHOLEBODY_SMITplus
Whole body, 46-organ segmentation using the SMIT+ model
cerr/model_installer
Install deep learning based models for medical image segmentation and registration.
cerr/MR_Prostate_Deeplab
Pre-trained model to auto-segment CTV and OARs on T2w-MRI prostate scans.
cerr/MRI_Pancreas_Fullshot_AnatomicCtxShape
Longitudinal registration and OAR segmentation model for pancreas MR images.