cfarkas

annotate_my_genomes

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

CellOracle

This is the alpha version of the CellOracle package

deeplearning-skincancer2021-udec

Analisis of Skin Cancer MNIST: HAM10000 dataset using state-of-the-art deep learning methods

FEELnc

FEELnc : FlExible Extraction of LncRNA

gawn

Genome Annotation Without Nightmares

Genotype-variants

A pipeline for collecting and visualize NGS variants from genetically engineered mouse models

gff3sort

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

SARS-CoV-2-freebayes

Analysis of SARS-CoV-2 genome variants collected with freebayes variant caller

SARS-CoV-2_illumina_analysis

Computational analysis to discover germline variants in illumina NGS data from SARS-CoV-2

variants2genes

Obtaining case-associated variants and correspondent genes (from control/case experiments) in BASH/R enviroment

cfarkas/annotate_my_genomes

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

cfarkas/SARS-CoV-2-freebayes

Analysis of SARS-CoV-2 genome variants collected with freebayes variant caller

cfarkas/SARS-CoV-2_illumina_analysis

Computational analysis to discover germline variants in illumina NGS data from SARS-CoV-2

cfarkas/variants2genes

Obtaining case-associated variants and correspondent genes (from control/case experiments) in BASH/R enviroment

cfarkas/CellOracle

This is the alpha version of the CellOracle package

cfarkas/deeplearning-skincancer2021-udec

Analisis of Skin Cancer MNIST: HAM10000 dataset using state-of-the-art deep learning methods

cfarkas/FEELnc

FEELnc : FlExible Extraction of LncRNA

cfarkas/gawn

Genome Annotation Without Nightmares

cfarkas/Genotype-variants

A pipeline for collecting and visualize NGS variants from genetically engineered mouse models

cfarkas/gff3sort

GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools

cfarkas/nextflow

A DSL for data-driven computational pipelines

cfarkas/ProblematicSites_SARS-CoV2

cfarkas/python-data-science-project

cfarkas/SALL2_conserved_network_analysis

Analysis of SALL2 isoform specific ChIP-seq data

cfarkas/shc

Shell script compiler

cfarkas/vcftools

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.