Pinned Repositories
cfljam.github.io
Blogging about working out how to do biology with code
galaxy-pcr-markers
Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files
Onion_BSA_RNASEQ_Workflow
Workflow for Analysis of Onion Bulked Segregant Analysis RNASEQ
pyRat
Jupyter notebooks plus R definitions for Docker
socker
Genetic analysis document authoring with Jupyter and Docker
SSR_marker_design
Galaxy Wrappers and helpers for the MISA ttols
TidyWGSWorkshop
Training and demo material for whole-genome analysis craft
VISG-course-2012
Unix shell scripts for demo workflow VISG Course October 2012
cfljam's Repositories
cfljam/SSR_marker_design
Galaxy Wrappers and helpers for the MISA ttols
cfljam/galaxy-pcr-markers
Scripts for design of PCR-based Marker Assays from DNA sequence variant data, plus Galaxy xml files
cfljam/TidyWGSWorkshop
Training and demo material for whole-genome analysis craft
cfljam/pyRat
Jupyter notebooks plus R definitions for Docker
cfljam/socker
Genetic analysis document authoring with Jupyter and Docker
cfljam/cfljam.github.io
Blogging about working out how to do biology with code
cfljam/Onion_BSA_RNASEQ_Workflow
Workflow for Analysis of Onion Bulked Segregant Analysis RNASEQ
cfljam/AlliumMap
Curated public data about genetic markers and mapping in onion and related Allium vegetables
cfljam/bioconda-recipes
Conda recipes for the bioconda channel.
cfljam/BiotronEnvironmentalAnalysis
Contains analysis of environmental data from biotron trails
cfljam/DataScienceWorkshop
cfljam/FutureModels
running mixed models via future
cfljam/GFBToolbox
Vagrant VM for Marker and statistical genomics data science
cfljam/GWASpoly
GWAS software that can handle autopolyploids
cfljam/Hort16AxRussell
cfljam/kiwigoldbreeding
cfljam/LetKEAFly
Let the Kea Fly-integrating genotype storage with KEA
cfljam/mapnetnz.github.io
MAPNet website
cfljam/mappoly2
Genetic Linkage Maps in Autopolyploids v 2.0
cfljam/ngspipeline
Our NGS Pipeline using Nextflow
cfljam/pcr_marker_design
Tools for PCR assay design from NGS variant data
cfljam/polyRAD
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
cfljam/Pop-Genomics-Workshop2019
Content for MAPNET Workshop in analysis of low-coverage population genomic data
cfljam/psychic-dangerzone
cfljam/pyrat_genetics
R genetics tools for Jupyter
cfljam/selectionTools
Pipeline to take VCF through to Selection Analysis.
cfljam/statgen_py_vm
Ubuntu 64 bit Vagrant VM for statistical genomics in Python
cfljam/swc-christchurch
Example repo for SWC @ eResearch
cfljam/test_targets_R4
testing targets R4 issues with callr
cfljam/Transposome
A toolkit for annotation of transposable element families from unassembled sequence reads