Pinned Repositories
metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
BNMTF_ARD
Python code for "Comparative Study of Inference Methods for Bayesian Nonnegative Matrix Factorisation", published at European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2017).
carveme_singularity
SIngularity image definition to install Cplex and Carveme in a container (e.g. for using the software on a cluster)
cfrioux.github.io
my web pages
conda-training
Conda repository for training
deadend_detector
Detection of deadends in metabolic networks
fluto
MeneTools
MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.
miscoto
Python package for large-scale community selection in microbiota
outreach
A repository dedicated to scientific outreach with resources for teaching metagenomics and metabolic modelling to young people and non profesional scientists.
cfrioux's Repositories
cfrioux/miscoto
Python package for large-scale community selection in microbiota
cfrioux/MeneTools
MeneTools are Python3 tools to explore the topology of metabolic networks. It includes Menecheck, Menescope, Menepath and Menecof.
cfrioux/outreach
A repository dedicated to scientific outreach with resources for teaching metagenomics and metabolic modelling to young people and non profesional scientists.
cfrioux/carveme_singularity
SIngularity image definition to install Cplex and Carveme in a container (e.g. for using the software on a cluster)
cfrioux/fluto
cfrioux/meneco
metabolic network completion
cfrioux/BNMTF_ARD
Python code for "Comparative Study of Inference Methods for Bayesian Nonnegative Matrix Factorisation", published at European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2017).
cfrioux/cfrioux.github.io
my web pages
cfrioux/conda-training
Conda repository for training
cfrioux/deadend_detector
Detection of deadends in metabolic networks
cfrioux/docker-libsbml-cobra
cfrioux/docker-matlab-runtime-v83
cfrioux/docker_cbc_solver
dockerfile for building images with CBC solver
cfrioux/docker_conda_ssh
Dockerfile for an image containing Conda, open-ssh and java-ready for installing IBM products
cfrioux/dotfiles
Helper to manage my dotfiles and some basic configurations on terminal based Operating Systems
cfrioux/metaGEM
An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
cfrioux/padmet-tricks
Some tiny scripts involving padmet to hack metabolic networks
cfrioux/pyasp
A convenience wrapper for the ASP tools gringo, gringo4 and clasp
cfrioux/readthedocs.org
The source code that powers readthedocs.org
cfrioux/scikit-learn
scikit-learn: machine learning in Python
cfrioux/supervenn
supervenn: precise and easy-to-read multiple sets visualization in Python
cfrioux/taxodist_for_reactions
Basis to get taxonomic information for reactions, starting from their affiliation to pathways