cgob

ARMOR

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

codon_usage

codonDT_snakemake

Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

BIO-411

public repository for the BIO411 course

BIO-411_2324

Repository for the exercise sessions of the module taught by Felix Naef for the BIO-411 course, in the 2023-24 academic year.

CHIRAL

Phase inference from unlabeled "OMICS" data

dryR

Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a time series with two and more conditions.

sra-tools

SRA Tools

cgob/codonDT_snakemake

Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).

cgob/ARMOR

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

cgob/codon_usage

cgob/dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow