Pinned Repositories
MotiFiesta
Approximate subgraph motif mining through learnable edge contraction.
proteinshake
Protein structure datasets for machine learning.
arXivDT
Full implementation of decision Tree Classifier of arXiv abstracts into subject.
Notebooks
Assorted Python Notebooks.
Nussinov
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
RNA-Popgen-Notebook
Jupyter notebook for RNA evolutionary algorithm and subsequent population genetics and BioPython tools.
rnaglib
Datasets and analysis tools for RNA 3D and 2.5D structures.
RNAmigos
GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)
rnamigos2
Rapid structure-based virtual screening for RNA targets.
vernal
Tools for discovering flexible motifs in RNA Graphs.
cgoliver's Repositories
cgoliver/RNAmigos
GCN implementation for RNA-small molecule binding prediction. (https://academic.oup.com/nar/article/48/14/7690/5870337)
cgoliver/rnaglib
Datasets and analysis tools for RNA 3D and 2.5D structures.
cgoliver/Nussinov
Python implementation of Nussinov RNA folding algorithm and recursive backtrack.
cgoliver/vernal
Tools for discovering flexible motifs in RNA Graphs.
cgoliver/rnamigos2
Rapid structure-based virtual screening for RNA targets.
cgoliver/cgoliver.github.io
cgoliver/MICRO-Graph
cgoliver/sysbio_workshop
cgoliver/WWL
Wasserstein Weisfeiler-Lehman Graph Kernels
cgoliver/mateRNAl
Evolutionary Algorithm for RNA populations with GC content bias.
cgoliver/A3C_mountaincar
cgoliver/Async-DQN-MountainCar
cgoliver/barnaba
Analyse Nucleic Acids Structure and Simulations with baRNAba
cgoliver/brute-saw
Brute force enumeration of self-avoiding walks
cgoliver/dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
cgoliver/fr3d-python
Python implementation of the FR3D software for searching and annotating RNA 3D structures
cgoliver/galaxy-hub
Galaxy Community Hub
cgoliver/lshash
locality sensitive hashing (LSHASH) for Python3
cgoliver/networkx
Official NetworkX source code repository.
cgoliver/neural-subgraph-learning-GNN
cgoliver/proteinshake
Protein structure datasets for machine learning.
cgoliver/proteinshake_release
cgoliver/proteinshake_sphinx_theme
PyG Sphinx Theme
cgoliver/PyGCL
PyGCL: A PyTorch Library for Graph Contrastive Learning
cgoliver/pytorch_geometric
Graph Neural Network Library for PyTorch
cgoliver/rebels-in-the-sky
P2P terminal game about spacepirates playing basketball across the galaxy
cgoliver/ROBIN
An analysis of a new experimentally-derived nucleic acid binding chemical library
cgoliver/scikit-learn
scikit-learn: machine learning in Python
cgoliver/testing
cgoliver/vanity_address
Bitcoin vanity address generator written in python