cguccione

Mathematical Biology ~ Bioinformatics ~ Oncology ~ Ph.D. Student in Bioinformatics and Systems Biology at the University of California, San Diego

Pinned Repositories

VarBench
Benchmarking variant callers for long read data
Language:Python1 2 00
metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
Language:Python8 10 6516
academic-kickstart
Easily create a beautiful website using Academic and Hugo
Language:Shell0 1 00
bisb-bootcamp-2020-module08
Language:Python0 1 00
comad
Community Assembly Dynamics of Microbes
Language:Jupyter Notebook1 2 00
HCC-microbialDNA
Microbial DNA as a Diagnostic Marker for Hepatocellular Carcinoma
Language:Jupyter Notebook1 1 00
host-filtration-notebooks
Language:Jupyter Notebook10
human_host_filtration
Pipeline which removes human DNA from microbial shotgun samples.
Language:Shell10 3 30
MostDetrimentalNodeFinder
CSE 282 Final Project
Language:Python1 3 50
NeutralEvolutionModeling
Neutral evolution modeling of microbes.
Language:Jupyter Notebook3 2 01

cguccione's Repositories

cguccione/human_host_filtration
Pipeline which removes human DNA from microbial shotgun samples.
Language:Shell10 3 30
cguccione/NeutralEvolutionModeling
Neutral evolution modeling of microbes.
Language:Jupyter Notebook3 2 01
cguccione/comad
Community Assembly Dynamics of Microbes
Language:Jupyter Notebook1 2 00
cguccione/HCC-microbialDNA
Microbial DNA as a Diagnostic Marker for Hepatocellular Carcinoma
Language:Jupyter Notebook1 1 00
cguccione/host-filtration-notebooks
Language:Jupyter Notebook10
cguccione/MostDetrimentalNodeFinder
CSE 282 Final Project
Language:Python1 3 50
cguccione/academic-kickstart
Easily create a beautiful website using Academic and Hugo
Language:Shell0 1 00
cguccione/bisb-bootcamp-2020-module08
Language:Python0 1 00
cguccione/bookdown-demo
A minimal book example using bookdown
Language:CSS0 1 00
cguccione/Bookdown_travis
00
cguccione/cctools
The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and grids.
Language:C0 1 00
cguccione/IMOP_downloaded
Same as IMOP clone but connect to GitHub
Language:HTML0 2 00
cguccione/Rutgers-REU-Cancer-Research
Calculating an accurate purity and tracking mutations in cancer cells
Language:Python0 1 00
cguccione/cguccione.github.io
A quicker, cleaner way to get started blogging with Hydejack.
Language:HTML1 0
cguccione/IMOP-travis
Latest version of IMOP while testing Travis
Language:HTML
cguccione/IMOP_github
Also IMOP to be accessed as a public webpage
Language:HTML1 01
cguccione/IMOP_quickStart
A simple Workflowr walkthrouhg
Language:HTML2 0
cguccione/Language_Identification_Project
CSC 211 Final Project
Language:C++1 0
cguccione/Liao_Cancer_Qiita
Transfer 16S stool from collaborator to cancer Qiita
Language:Jupyter Notebook2 0
cguccione/makeflow-examples
Example workflows for the Makeflow workflow system.
Language:Python1 0
cguccione/MED263
Class page for MED263 Winter 2022, Bioinformatics Applications to Human Disease at the University of California, San Diego
Language:HTML1 0
cguccione/MetagenomeRarefaction
Software for rarefying metagenomes.
Language:Shell1 0
cguccione/metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
Language:Jupyter Notebook1 0
cguccione/PDAC_patient_stratification
The orange unicorns 🍊🦄
Language:Jupyter Notebook1 0
cguccione/q2-benchmark
1 0
cguccione/q2-feature-table
QIIME 2 plugin supporting operations on feature tables.
Language:Python1 0
cguccione/SchwartzLab
Language:Jupyter Notebook1 0
cguccione/test
Language:R2 0
cguccione/tic.bookdown
Language:CSS1 0
cguccione/UpdatedGeneName2GoTerm
Language:R1 0