cguyomar

Pinned Repositories

aa_equalizer
Language:Jupyter Notebook00
aphid_microbiome_website
Additional information for Guyomar et al 2018, accepted in Microbiome
Language:HTML00
BiDiGraph.jl
Implementation of bi-directed graphs in Julia
Language:Julia00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
cguyomar.github.io
Personnal webpage
Language:JavaScript0 1 00
custom_images_mqc_plugin
Plugin to insert images in a MultiQC report
Language:Python01
dragibus
Language:Python00
MinYS
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.
Language:Python11 4 61
MinYS_paper_reproducibility
Documentation for the MinYS paper experiments
Language:Shell11
PARSEC
Variant calling and imputation from low coverage sequencing data
Language:Nextflow30

cguyomar's Repositories

cguyomar/MinYS
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.
Language:Python11 4 61
cguyomar/PARSEC
Variant calling and imputation from low coverage sequencing data
Language:Nextflow30
cguyomar/MinYS_paper_reproducibility
Documentation for the MinYS paper experiments
Language:Shell11
cguyomar/aa_equalizer
Language:Jupyter Notebook00
cguyomar/aphid_microbiome_website
Additional information for Guyomar et al 2018, accepted in Microbiome
Language:HTML00
cguyomar/BiDiGraph.jl
Implementation of bi-directed graphs in Julia
Language:Julia00
cguyomar/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell00
cguyomar/cguyomar.github.io
Personnal webpage
Language:JavaScript0 1 00
cguyomar/custom_images_mqc_plugin
Plugin to insert images in a MultiQC report
Language:Python01
cguyomar/dragibus
Language:Python00
cguyomar/Graphs.jl
Working with graphs in Julia
Language:Julia
cguyomar/Help4MultiQC_plugin
MultiQC plugin that allows to overload the help text of existing modules
Language:Python
cguyomar/LightGraphs.jl
An optimized graphs package for the Julia programming language
Language:Julia
cguyomar/MindTheGap
MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome.
Language:C++
cguyomar/MindTheGap.jl
Browse GFA graph in Julia
Language:Julia
cguyomar/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow
cguyomar/multiqc_feelnc
Multiqc plugin to report FEELnc results in the TAGADA pipeline
Language:Python
cguyomar/nf-pegASE
Language:Nextflow
cguyomar/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
cguyomar/smrnaseq
A small-RNA sequencing analysis pipeline
Language:Nextflow1 0
cguyomar/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python1 0
cguyomar/test-datasets
Test data to be used for automated testing with the nf-core pipelines