/proBAMr

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/proBAMr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=proBAMr.

Primary LanguageR

proBAMr

TravisCI Build Status Coverage Status Platforms version

Package Homepage: http://bioconductor.org/packages/devel/bioc/html/proBAMr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=proBAMr

The interpretation of proteomics data is significantly enhanced by genomic annotation. Using proBAMr, peptide-spectrum-matches can be easily reannotated using user-specified gene annotation schemes and assembled into both protein and gene identifications. Using the genome as a common reference, proBAMr facilitates seamless proteomics and proteogenomics data integration. ProBAM files can be readily visualized in genome browsers and thus bring proteomics data analysis to a general audience beyond the proteomics community.

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proBAMr")

Alternatively, you can install the latest version from github using devtools:

# install.packages("devtools")
devtools::install_github("chambm/proBAMr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proBAMr")