Pinned Repositories
ADToolbox
AD Toolbox: A python package for modeling and optimization on anaerobic digestion process
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
lll-FVA
mag
Assembly and binning of metagenomes
NECom-FShaP
OptForce_Bdoh
A repository for bdoh over production work
PyADM1
PyADM1: a Python implementation of Anaerobic Digestion Model number 1
SPAM-DFBA
Formal repository for "Microbial Interactions from a New Perspective: Reinforcement Learning Reveals New Insights into Microbiome Evolution"
spatialGut
spatialGut: simulating the longitudinally and radially varying gut microbiota composition
SteadyCom
Computing the maximum growth rate of a microbial community at community steady-state
Chan Lab at Colorado State University's Repositories
chan-csu/SPAM-DFBA
Formal repository for "Microbial Interactions from a New Perspective: Reinforcement Learning Reveals New Insights into Microbiome Evolution"
chan-csu/OptForce_Bdoh
A repository for bdoh over production work
chan-csu/ADToolbox
AD Toolbox: A python package for modeling and optimization on anaerobic digestion process
chan-csu/PyADM1
PyADM1: a Python implementation of Anaerobic Digestion Model number 1
chan-csu/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
chan-csu/lll-FVA
chan-csu/mag
Assembly and binning of metagenomes
chan-csu/NECom-FShaP
chan-csu/RCJ_Megtagenomics
A New Repository for RCE Metagenomics Project
chan-csu/spatialGut
spatialGut: simulating the longitudinally and radially varying gut microbiota composition
chan-csu/SteadyCom
Computing the maximum growth rate of a microbial community at community steady-state
chan-csu/YAMP
YAMP: Yet Another Metagenomic Pipeline
chan-csu/ADSimulations
A repository for using ADToolbox on realworld data
chan-csu/BiomassMW
Determining the chemical formulae and molecular weights of macromolecules in genome-scale metabolic models
chan-csu/BiomassMWpy
chan-csu/carveme
CarveMe: genome-scale metabolic model reconstruction
chan-csu/inhouseCobraFunctions
Some in-house matlab functions compatible with the COBRA toolbox
chan-csu/modelEcnLggExoMetabolomes
chan-csu/modelsChan2017
The 20 curated models published in Chan et al., 2017, Bioinformatics
chan-csu/nextflow_sourmash
chan-csu/spades
SPAdes Genome Assembler
chan-csu/Tychus