chandler37/gedmatch-tools

Tools and Python API for GEDMatch Genesis (https://genesis.gedmatch.com)

gedmatch-tools

Tools and Python API for GEDMatch Genesis.

Installation

Python 3.6 or higher is required.

To clone the repository: git clone https://github.com/nh13/gedmatch-tools.git.

To install locally: python setup.py install.

The command line utility can be run with gedmatch-tools

Command Line

To see a list of available tools, run gedmatch-tools --help.

For example, the tool to list all kits is gedmatch-tools ls --help

Documentation

See the following Documentation.

See the Usage for example tool usage .

See the API for using gedmatch-tools programatically.

Items to be completed prior to an initial release

• remaining features
  • add github issues for other applications/routes (user-requests?)
• packaging and distribution
  • bioconda
  • pypi
• testing
  • set up travis-ci, including testing email/password for logging into the GEDMatch site
  • uni testing
    • parsing credentials (.gedmatch file, environment variables)
    • getting to the main page (gedmatch_tools.util.main_page())
    • adding a kit or kits (gedmatch_tools.tools.add.*)
    • listing already added/uploaded kits (gedmatch_tools.tools.ls)
    • delete kit or kits ( gedmatch_tools.tools.rm)
    • perform one or more 1:1 autosomal analyses (gedmatch_tools.tools.one_to_one)
    • perform one or more 1:many autosomal analyses (gedmatch_tools.tools.one_to_many)