chaochaowong
Bioinformatician at Seattle Children's Research Institute
Seattle Children's HospitalSeattle
Pinned Repositories
bc-data-science-gcp
book club labs
canFam3.DuxFamily
Processed RNA-seq, documentation of the bioinformatics analysis and reproducible code for DUXC expression and functions in canine myoblast
countRepeats
Tools to count hits for repeat elements and enrichment/depletion analysis, and visualization. This package is a replacement of the rmskStats package.
data-science-on-gcp
Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017
datadrivencv
R package for building customizable CVs from spreadsheets
datadrivencv-cjwong
domainCalling
Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq
Dux4-activated-dsRNAs
Tools and scripts supporting the analysis of peer-reviewed paper by Sean Shadle et. al. - DUX4 activates double stranded RNAs derived from pericentric human satellite II repeats.
peakable
peakable provides tools for peak call QC for CUT&RUN and CUT&Tag-seq, importing/exporting MACS2 or SEACR peak files, and downstream analysis.
pocketbase-app
Web application for the backend pocketbase service for Sarthy Lab
chaochaowong's Repositories
chaochaowong/peakable
peakable provides tools for peak call QC for CUT&RUN and CUT&Tag-seq, importing/exporting MACS2 or SEACR peak files, and downstream analysis.
chaochaowong/pocketbase-app
Web application for the backend pocketbase service for Sarthy Lab
chaochaowong/bc-data-science-gcp
book club labs
chaochaowong/canFam3.DuxFamily
Processed RNA-seq, documentation of the bioinformatics analysis and reproducible code for DUXC expression and functions in canine myoblast
chaochaowong/countRepeats
Tools to count hits for repeat elements and enrichment/depletion analysis, and visualization. This package is a replacement of the rmskStats package.
chaochaowong/data-science-on-gcp
Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017
chaochaowong/datadrivencv
R package for building customizable CVs from spreadsheets
chaochaowong/datadrivencv-cjwong
chaochaowong/domainCalling
Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq
chaochaowong/Dux4-activated-dsRNAs
Tools and scripts supporting the analysis of peer-reviewed paper by Sean Shadle et. al. - DUX4 activates double stranded RNAs derived from pericentric human satellite II repeats.
chaochaowong/Dux4FamilyGeneNetwork
chaochaowong/FSHD-Biopsy-RNA-seq
Preprocessing pipeline and analysis codes for FSHD-Biopsy RNA-seq data
chaochaowong/hg38
Tools to build TxDb and EnsDb packages of genome build hg38
chaochaowong/made-mistakes-jekyll
:ghost: Source for my website and blog (Jekyll + Gulp + Travis CI)
chaochaowong/rememberMike.io
chaochaowong/estimateGenomicOverlaps
chaochaowong/flair_nf
Nextflow workflow for FLAIR
chaochaowong/geo_sra_metadata
NextFlow pipeline to fetch and join metadata from GEO and SRA
chaochaowong/pocketbase-aws
Infrastructure code to prepare AWS resources and deploy a Pocketbase instance
chaochaowong/rmskStats
Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats
chaochaowong/sasquatch-nf-config
Nextflow config files for SCRI sasquatch
chaochaowong/SeqPipelineTools
Preprocessing, variants tools for RNA-seq, ChIP-seq analysis
chaochaowong/tidynoddy
Make sample sheet for Nextflow CUT&RUN and CUT&Tag pipleine
chaochaowong/UCSCTrackTools
Tools to make coverage or junction files (*.bed, *.bedGraph, *.bigWig) for RNA-seq and ChIP-seq data
chaochaowong/Wellstone_BiLateral_Biopsy
chaochaowong/wget_novogene_using_slurm
Convenient tools to wget folders from Novogenes using Python's FTP and subprocess packages