chaochaowong

bc-data-science-gcp

book club labs

canFam3.DuxFamily

Processed RNA-seq, documentation of the bioinformatics analysis and reproducible code for DUXC expression and functions in canine myoblast

countRepeats

Tools to count hits for repeat elements and enrichment/depletion analysis, and visualization. This package is a replacement of the rmskStats package.

data-science-on-gcp

Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017

datadrivencv

R package for building customizable CVs from spreadsheets

datadrivencv-cjwong

domainCalling

Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq

Dux4-activated-dsRNAs

Tools and scripts supporting the analysis of peer-reviewed paper by Sean Shadle et. al. - DUX4 activates double stranded RNAs derived from pericentric human satellite II repeats.

peakable

peakable provides tools for peak call QC for CUT&RUN and CUT&Tag-seq, importing/exporting MACS2 or SEACR peak files, and downstream analysis.

pocketbase-app

Web application for the backend pocketbase service for Sarthy Lab

chaochaowong/peakable

peakable provides tools for peak call QC for CUT&RUN and CUT&Tag-seq, importing/exporting MACS2 or SEACR peak files, and downstream analysis.

chaochaowong/pocketbase-app

Web application for the backend pocketbase service for Sarthy Lab

chaochaowong/bc-data-science-gcp

book club labs

chaochaowong/canFam3.DuxFamily

Processed RNA-seq, documentation of the bioinformatics analysis and reproducible code for DUXC expression and functions in canine myoblast

chaochaowong/countRepeats

Tools to count hits for repeat elements and enrichment/depletion analysis, and visualization. This package is a replacement of the rmskStats package.

chaochaowong/data-science-on-gcp

Source code accompanying book: Data Science on the Google Cloud Platform, Valliappa Lakshmanan, O'Reilly 2017

chaochaowong/datadrivencv

R package for building customizable CVs from spreadsheets

chaochaowong/datadrivencv-cjwong

chaochaowong/domainCalling

Tools to call large binding domains from CutAndRun-seq or to identify long non-coding RNA transcripts from RNA-seq

chaochaowong/Dux4-activated-dsRNAs

Tools and scripts supporting the analysis of peer-reviewed paper by Sean Shadle et. al. - DUX4 activates double stranded RNAs derived from pericentric human satellite II repeats.

chaochaowong/Dux4FamilyGeneNetwork

chaochaowong/FSHD-Biopsy-RNA-seq

Preprocessing pipeline and analysis codes for FSHD-Biopsy RNA-seq data

chaochaowong/hg38

Tools to build TxDb and EnsDb packages of genome build hg38

chaochaowong/made-mistakes-jekyll

:ghost: Source for my website and blog (Jekyll + Gulp + Travis CI)

chaochaowong/rememberMike.io

chaochaowong/estimateGenomicOverlaps

chaochaowong/flair_nf

Nextflow workflow for FLAIR

chaochaowong/geo_sra_metadata

NextFlow pipeline to fetch and join metadata from GEO and SRA

chaochaowong/pocketbase-aws

Infrastructure code to prepare AWS resources and deploy a Pocketbase instance

chaochaowong/rmskStats

Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats

chaochaowong/sasquatch-nf-config

Nextflow config files for SCRI sasquatch

chaochaowong/SeqPipelineTools

Preprocessing, variants tools for RNA-seq, ChIP-seq analysis

chaochaowong/tidynoddy

Make sample sheet for Nextflow CUT&RUN and CUT&Tag pipleine

chaochaowong/UCSCTrackTools

Tools to make coverage or junction files (*.bed, *.bedGraph, *.bigWig) for RNA-seq and ChIP-seq data

chaochaowong/Wellstone_BiLateral_Biopsy

chaochaowong/wget_novogene_using_slurm

Convenient tools to wget folders from Novogenes using Python's FTP and subprocess packages