chaoszhang

University of Copenhagen

Pinned Repositories

A-pro
ASTRAL for PaRalogs and Orthologs
Language:Java19 2 156
A-pro_data
Data and Figures for ASTRAL-Pro Paper
Language:Jupyter Notebook10
ASTER
Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
Language:C++100 4 3210
ASTER-tutorial
Tutorial for ASTER
1 2 00
ASTRAL
Accurate Species TRee ALgorithm IV (Warning: a bleeding edge version)
Language:Java6 3 00
Dynamic-ASTRAL
ASTRAL with dynamically determined search space in Julia
Language:Julia10
immunosimulator
Dynamic IMmuno-SIMulator
Language:C++10
TAPER
Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignments
Language:Julia9 5 71
Weighted-ASTRAL_data
2 2 00
ASTRAL
Accurate Species TRee ALgorithm
Language:Java247 21 7369

chaoszhang's Repositories

chaoszhang/ASTER
Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
Language:C++100 4 3210
chaoszhang/A-pro
ASTRAL for PaRalogs and Orthologs
Language:Java19 2 156
chaoszhang/TAPER
Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignments
Language:Julia9 5 71
chaoszhang/ASTRAL
Accurate Species TRee ALgorithm IV (Warning: a bleeding edge version)
Language:Java6 3 00
chaoszhang/Weighted-ASTRAL_data
2 2 00
chaoszhang/A-pro_data
Data and Figures for ASTRAL-Pro Paper
Language:Jupyter Notebook10
chaoszhang/ASTER-tutorial
Tutorial for ASTER
1 2 00
chaoszhang/Dynamic-ASTRAL
ASTRAL with dynamically determined search space in Julia
Language:Julia10
chaoszhang/immunosimulator
Dynamic IMmuno-SIMulator
Language:C++10
chaoszhang/ASTER-SE
ASTER Special Editions
Language:C++00
chaoszhang/MASTERWORK
MASTER for phylogenetic netWORK
Language:C++0 1 00
chaoszhang/A-pro2_data
Language:R
chaoszhang/AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GrCH37 reference sequence and one or more regions of interest. This is development version. Please "watch" this repository for production release and methods manuscript soon.
Language:Python
chaoszhang/ANI-skmer
Language:C++
chaoszhang/ASTRAL-Duploss
Language:C++
chaoszhang/BGCMSFAST
Basic Generic Chromatography Mass Spectrometry Search Tool
Language:C++
chaoszhang/bionano-assembler
Language:C++
chaoszhang/CASTER-data
Scripts for generating data and figures for CASTER paper
Language:Mathematica1 0
chaoszhang/ctoj
这是一个中日汉字文字转换网站
Language:JavaScript
chaoszhang/DIMSIM-data
Language:Jupyter Notebook1
chaoszhang/github-push-action
GitHub actions to push back to repository eg. updated code
Language:JavaScript
chaoszhang/julia-NotepadPlusPlus
Julia language support for Notepad++
Language:AutoHotkey
chaoszhang/MaaAssistantArknights
《明日方舟》小助手，全日常一键长草！| An Arknights assistant compatible with EN, JP, KR, ZH_TW clients
Language:C++
chaoszhang/MASTER-scripts
Language:C++
chaoszhang/non-conventional-network-propagation
Network Propagation via non-linear differential equation or neural network
Language:Python
chaoszhang/rnn
Recurrent Neural Network library for Torch7's nn
Language:Lua
chaoszhang/rosalind-moss
Plagiarism checker for code submitted to Rosalind WITHOUT using Stanford's Moss.
Language:Python
chaoszhang/scripts
Useful scripts
Language:Python
chaoszhang/System-Wide-MS-course-Target-Journal-ACS-Analytical-Chemistry
MS feature alignment tools and graph creating algorithm codes used in the paper.
Language:C++
chaoszhang/Threading-demo
Demos for multi-threading
Language:C++