charlesdavid
https://www.linkedin.com/in/charles-david-7143b810/
Plant and Food research, Ltd.Lincoln, New Zealand
Pinned Repositories
DCM
mDCM, FAST, QSFR
EssentialDynamics
PCA, KPCA, Subspace Analysis
MachineLearning
Development of ML tools
JED
JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.
JEDi
JEDi: Java Essential Dynamics Inspector
ngs
Source for building the bschiffthaler/ngs docker
sandpit
A demonstration repository
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sandpit
A demonstration repository
charlesdavid's Repositories
charlesdavid/JED
JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.
charlesdavid/JEDi
JEDi: Java Essential Dynamics Inspector
charlesdavid/ngs
Source for building the bschiffthaler/ngs docker
charlesdavid/sandpit
A demonstration repository