This repository includes scripts that implement experiments from "The Evolution of Phenotypic Correlations and Developmental Memory" by Watson et al. (https://onlinelibrary.wiley.com/doi/full/10.1111/evo.12337). One can replicate experiments 1 and 2 depicted in figures 1 and 2 of the original paper.
Each script replicates a specific aspect of experiments 1 and 2 while helper functions generate the respective plots. Namely:
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single_env.py: serves as a placeholder for the gene regulatory network (GRN) and implements experiment 1 with a single phenotypic target.
Figure 1: Single Environment Selection Pressure
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varying_env.py: implements experiment 2 with a varying phenotypic target.
Figure 2: Two-target Environment Selection Pressure
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hebb_net_exp2.py: serves as the implementation of evolution via the Hebb rule:$\Delta w = x_{in}\cdot y $ -
generate_plots.py: includes helper functions that generate the plots shown in figure 1 & 2 of the original paper. -
varying_env_maskB.py: serves as an extension of the experiments presented in the original paper and explores the capacity of GRNs when one gradually prevents genes from interacting.
Figure 3: Masking the GRN
GPL-3.0-only