checheanya

checheanya's Stars

• deanslee/FigureOneLab

  Hone computational biology skills by re-enacting Figure 1 of modern biology papers

  Language:Jupyter Notebook17838

• apcamargo/genomad

  geNomad: Identification of mobile genetic elements

  Language:Python18917

• kelwyres/Bactabolize

  Language:Python34

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow40369

• pha4ge/hAMRonization

  Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

  Language:Python13827

• oschwengers/asap

  A scalable bacterial genome assembly, annotation and analysis pipeline

  Language:Groovy7019

• biobakery/humann

  HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

  Language:Python16758

• bcgsc/AMPlify

  Attentive deep learning model for antimicrobial peptide prediction

  Language:Python389

• phac-nml/staramr

  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

  Language:Python11626

• Merck/deepbgc

  BGC Detection and Classification Using Deep Learning

  Language:Jupyter Notebook12427

• tseemann/abricate

  :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

  Language:Perl36490

• Sydney-Informatics-Hub/Shotgun-Metagenomics-Analysis

  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more

  Language:Shell266

• ventolab/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Jupyter Notebook32351

• rnabioinfor/METTL1_m7G

  Language:R1

• stracquadaniolab/cubseq-nf

  CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

  Language:R21

• trevismd/statannotations

  add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

  Language:Python65573

• pytorch/pytorch

  Tensors and Dynamic neural networks in Python with strong GPU acceleration

  Language:Python82.7k22.3k

• jax-ml/jax

  Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

  Language:Python30.1k2.8k

• yandexdataschool/Practical_RL

  A course in reinforcement learning in the wild

  Language:Jupyter Notebook5.9k1.7k

• sshkhr/Practical_RL

  My solutions to Yandex Practical Reinforcement Learning course in PyTorch and Tensorflow

  Language:Jupyter Notebook5425

• awesome-mlss/awesome-mlss

  🤖 Machine Learning Summer School deadlines

  Language:HTML2.6k296

• sshkhr/dlai-companion

  Notes, reviews, and detailed learning paths for deeplearning.ai courses

  2

• AI4SCR/MatchCLOT

  Python package implementing our method MatchCLOT for multimodal single-cell data integration

  Language:Jupyter Notebook113

• ruppinlab/PERCEPTION

  Utilizing single-cell omics from patients tumor to predict response and resistance.

  6015

• DanHanh/scLinear

  Language:R161

• cplmakerlab/simple-website-template

  Website URL

  Language:HTML24582

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k344

• dropbox/dbxcli

  A command line client for Dropbox built using the Go SDK

  Language:Go1.1k100

• kaizhang/SnapATAC2

  Single-cell epigenomics analysis tools

  Language:Python22224

• GreenleafLab/ArchR

  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

  Language:R380135