Pinned Repositories
ariane
rnaseq analysis
cb_diff_seq
charlotta_gsea
charlotta_monocle
charlotta_paper
Figures for Paper
covidhackathon
Covid Hackathon expression pipeline
lp-wgs
lp-wgs
nf-core-mutectplatypus
nf-core-umialign
sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
chelauk's Repositories
chelauk/chelauk.github.io
chelauk/lp-wgs
lp-wgs
chelauk/nf-core-demultiplex-methylation
chelauk/nf-core-mutectplatypus
chelauk/nf-core-umialign
chelauk/sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
chelauk/ctj-beagleberg
chelauk/fastquorum
chelauk/fht-ngscheck
chelauk/fht-trycycler
chelauk/hello-world
Git-it tutorial
chelauk/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
chelauk/italian_learning
chelauk/jsondb
trying to create a simple effect file database
chelauk/judy_recipe
chelauk/methylseq
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
chelauk/ML-For-Beginners
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
chelauk/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
chelauk/my_codespace
learning_codespaces
chelauk/nf-core-blasr
chelauk/nf-core-egatransfer
chelauk/nf-core-fastqtoconsensus
fastq to filtered consensus using fgbio best practice
chelauk/nf-core-freia
chelauk/nf-core-trimmomatic
chelauk/nf-core-umi_preprocessing
chelauk/nf-core-umipreprocessing
chelauk/pcawg_liftover
chelauk/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
chelauk/sottorivalab-deconvolve
chelauk/wf-alignment