chen42

I study addiction using rat models and enjoy analyzing data and coding.

UTHSCMemphis

Pinned Repositories

atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
Language:Python0 2 00
behavflow
automating the workflow of collecting rodent behavioral data
Language:Perl20
chilibot
Language:HTML3 2 12
darkRodents
Windows and Linux version of Darknet Yolo v2 & v3 Neural Networks for object detection
Language:C41
DNN4G2P
Using deep neural network to predict coat color from SNP data
Language:Python4 4 03
eqtl_app
visualize eQTL from the heterogeneous stock rats
Language:R0 2 00
openbehavior
Building rodent behavioral testing devices using the Raspberry Pi computer.
Language:Python17 12 110
proc10xG
processing 10x genomics reads
Language:Python1 3 00
RatsPub
Using PubMed to find out how a gene contributes to addiction.
Language:Python218
Yorodent
Using Yolo CNN to analyze rodent social behavior
Language:OpenSCAD11

chen42's Repositories

chen42/RatsPub
Using PubMed to find out how a gene contributes to addiction.
Language:Python218
chen42/openbehavior
Building rodent behavioral testing devices using the Raspberry Pi computer.
Language:Python17 12 110
chen42/darkRodents
Windows and Linux version of Darknet Yolo v2 & v3 Neural Networks for object detection
Language:C41
chen42/DNN4G2P
Using deep neural network to predict coat color from SNP data
Language:Python4 4 03
chen42/chilibot
Language:HTML3 2 12
chen42/behavflow
automating the workflow of collecting rodent behavioral data
Language:Perl20
chen42/proc10xG
processing 10x genomics reads
Language:Python1 3 00
chen42/Yorodent
Using Yolo CNN to analyze rodent social behavior
Language:OpenSCAD11
chen42/eqtl_app
visualize eQTL from the heterogeneous stock rats
Language:R0 2 00
chen42/bootstrap-datepicker
A datepicker for twitter bootstrap (@twbs)
Language:JavaScript1 0
chen42/chenlab.us
Language:JavaScript2 0
chen42/compiled_matrix_view
10X Chromium data of inbred rats mapped against mRatNor1
1 0
chen42/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language:Python
chen42/DeepWAS
DeepWAS: Directly integrating regulatory information into GWAS using machine learning
Language:Jupyter Notebook
chen42/flask-progress-bar
Language:HTML2 0
chen42/linux-at-univesity-of-tennessee
Using Linux at the University of Tennessee
2 0
chen42/longranger
scripts for running longranger on clusters
Language:Shell2 0
chen42/opar-website
Omics Portal For Addiction Research main site
Language:HTML1 0
chen42/rat_pangenome
Language:Shell
chen42/ratremor
Measure tremor in rats
chen42/RatSocialInteractionTest
2 0
chen42/rn6_assembly_error_app
Language:R2 0
chen42/SARS-CoV-2
Open source genomic data and analysis of SARS-CoV-2
Language:Shell3 0
chen42/save_loupe_matrixView
Language:Python
chen42/slides
Language:JavaScript2 0
chen42/tailTimer
A device for automating the tail immersion assay
Language:OpenSCAD2 0
chen42/talks
chen42/team5045.com
White Station Robotics official site
Language:HTML
chen42/vighr
3D printed vascular implant for group housed rats.
Language:OpenSCAD
chen42/vim-typora
🗒 Vim ❤️ Typora
Language:Vim script2 0