Pinned Repositories
amr_pipeline
bioconda-recipes
Conda recipes for the bioconda channel.
dnaland
Selected source code for DNA.Land (https://dna.land)
earth_virome_pipeline
Pipeline for the detection and isolation of viral reads from metagenomic data
EdwardsLab
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at SDSU.
genographic_ancestry
gestation_multiomics
An reanalysis of Ghaemi et al (2018, Bioinformatics) using a simpler Elastic Net model and further statistical analysis to identify batch effect and outliers
rjnmf
spraw_expenditure
Beyond Density: Municipal Expenditures and the Shape and Location of Development
translator-bigquery-api
This is the API for the translator biqquery project
chengdai's Repositories
chengdai/earth_virome_pipeline
Pipeline for the detection and isolation of viral reads from metagenomic data
chengdai/genographic_ancestry
chengdai/rjnmf
chengdai/translator-bigquery-api
This is the API for the translator biqquery project
chengdai/amr_pipeline
chengdai/bioconda-recipes
Conda recipes for the bioconda channel.
chengdai/dnaland
Selected source code for DNA.Land (https://dna.land)
chengdai/EdwardsLab
Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at SDSU.
chengdai/gestation_multiomics
An reanalysis of Ghaemi et al (2018, Bioinformatics) using a simpler Elastic Net model and further statistical analysis to identify batch effect and outliers
chengdai/spraw_expenditure
Beyond Density: Municipal Expenditures and the Shape and Location of Development
chengdai/flashpca
Fast Principal Component Analysis of Large-Scale Genome-Wide Data
chengdai/manuals-and-policies
chengdai/NCBI_taxonomy_tree
NCBI taxonomy tree in-memory mapping
chengdai/NG
chengdai/openheatmap
A web renderer for geographic heat maps, using OpenStreetMap compatible file formats
chengdai/qiime2_processing
Running QIIME2/DADA2 on a set of sample
chengdai/ristretto
Randomized Dimension Reduction Library
chengdai/statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
chengdai/StrainSifter
A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
chengdai/web_data_scraping