Data analysis code for "snRNA-seq of long-preserved FFPE samples from colorectal liver metastasis lesions with diverse prognoses".
00_starSoloPipe: alignment and quantification of sequencing data based on STARsolo
01-runSeurat.R: clustering and annotation analysis for each sample
02-runIntegrated.R: multi-sample integration analysis by liger
03_anno_plot.R: relevant plotting code
04_copykat.R: CNV analysis based on Copykat
05_lncRNA-mRNA-pair: lncRNA and mRNA correlation analysis