Pinned Repositories
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bioc2016singlecell
Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
bootstrap-table
CancerT.web
CancerT Database
chenx-bob.github.io
github blog
precisionFDA
precisionFDA is a cloud based platform that provides an environment where the community can test, pilot, and benchmark new approaches to validating their next-generation sequencing (NGS) analysis pipelines. PrecisionFDA offers community members a secure and independent work area where, at their discretion, their bioinformatics tools or data can be kept private or shared with the precisionFDA participants.
rtg-tools
RTG Tools: Utilities for accurate VCF comparison and manipulation
speedseq
A flexible framework for rapid genome analysis and interpretation
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
trinityrnaseq.github.io
Trinityrnaseq website
chenx-bob's Repositories
chenx-bob/Captain-ACHAB
Analysis Converter for Human who might Abhor Bioinformatics. A simple and useful interface to analysis of WES data for molecular diagnosis
chenx-bob/CDPI
Towards a Universal Approach for Predicting Variant Pathogenicity in Diverse Disease Landscapes
chenx-bob/cola
A General Framework for Consensus Partitioning
chenx-bob/deeplearning.ppi
A deep learning framework for improving protein interaction prediction using sequence properties
chenx-bob/downloadSRA
Download an SRA file when the ID has been given
chenx-bob/EnrichedHeatmap
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
chenx-bob/ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
chenx-bob/gtrellis
Genomic plot in trellis layout
chenx-bob/HarmonizomePythonScripts
chenx-bob/hyperopt
Distributed Asynchronous Hyperparameter Optimization in Python
chenx-bob/Identify_gCNV_with_WES
Analysis workflow to assess germline copy number variants from human whole-exome sequencing
chenx-bob/iGMDR-1
an integrative database for investigating genetic model of drug response in cancer
chenx-bob/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
chenx-bob/MAESTRO
Single-cell Transcriptome and Regulome Analysis Pipeline.
chenx-bob/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in house studies.
chenx-bob/MPA
MoBiDiC Priorization Algorithm
chenx-bob/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
chenx-bob/NGS
Scripts for next generation sequencing
chenx-bob/plink2merlin
Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
chenx-bob/PlotCNV
An R package to create a pretty Copy Number Variant plot from a segments file
chenx-bob/proxy_pool
Python爬虫代理IP池(proxy pool)
chenx-bob/scikit-learn
scikit-learn: machine learning in Python
chenx-bob/scMCA
Mouse cell atlas
chenx-bob/scRNA-seq_notes
A list of scRNA-seq analysis tools
chenx-bob/SequencEnG
An interactive learning resource for next-generation sequencing (NGS) techniques
chenx-bob/simplifyGO
Simplify GO enrichment results
chenx-bob/TCGAbiolinks
TCGAbiolinks
chenx-bob/trackViewer
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
chenx-bob/tutorials
Python tutorials and examples
chenx-bob/vcf_anno
A VCF annotation tool/prototype with ExAC API