chenyenchung
A learning developmental neurobiologist who messes around with programs and likes statistics
New York UniversityUSA
Pinned Repositories
Applied_genomics_2021
Recitation material for applied genomics (Spring 2021)
AwesomeCV
Modified AwesomeCV with automatic publication processing
chenyenchung
Profile repo
GitHub-Project-1
mixture_modeling_smk
Bayesian mixture modeling from Davis et al. (https://elifesciences.org/articles/50901) adapted to be a Snakemake pipeline
PubmedWordcloud
Making word cloud from available abstracts from PubMed
scbamsplit
scMarco
Interactive visualization of binarized gene expression for combinatorial marker discovery
splitgal4.org
Source for splitgal4.org, a platform to share intersectional fly genetic resources.
Taiwan_COVID_test_param_search
Estimating the prevalence of the tested population and the sensitivity and specificity of the COVID test used in Taiwan
chenyenchung's Repositories
chenyenchung/Applied_genomics_2021
Recitation material for applied genomics (Spring 2021)
chenyenchung/AwesomeCV
Modified AwesomeCV with automatic publication processing
chenyenchung/PubmedWordcloud
Making word cloud from available abstracts from PubMed
chenyenchung/scbamsplit
chenyenchung/Taiwan_COVID_test_param_search
Estimating the prevalence of the tested population and the sensitivity and specificity of the COVID test used in Taiwan
chenyenchung/chenyenchung
Profile repo
chenyenchung/GitHub-Project-1
chenyenchung/JACbrowse
An interface for exploring a couple of published NGS datasets
chenyenchung/LabScribe3-CMAP-Plot
It draws an overview waveform graph and a summary boxplot of the wave amplitude. Both graphic is faceted by assay time point and sample type
chenyenchung/mixture_modeling_smk
Bayesian mixture modeling from Davis et al. (https://elifesciences.org/articles/50901) adapted to be a Snakemake pipeline
chenyenchung/scMarco
Interactive visualization of binarized gene expression for combinatorial marker discovery
chenyenchung/splitgal4.org
Source for splitgal4.org, a platform to share intersectional fly genetic resources.
chenyenchung/insitu_probe_generator
Generate HCR-style Probe Pairs for mRNA visualization
chenyenchung/LightCycler480-Plot
Quick barplot (for n = 1) or stripchart with error bar for QPCR samples
chenyenchung/mixture_modeling
Code accompanying Davis, Nern et al., 2018
chenyenchung/NYU_SURP_blogdown
Rmarkdown source files for the website so we can manage the website with blogdown.
chenyenchung/personal_site
Source repo for a Hugo-generated personal site
chenyenchung/popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
chenyenchung/popscle_helper_tools
Helper tools for popscle
chenyenchung/rnaseq_practice
chenyenchung/scTE
chenyenchung/scViz
Plots That You Might Also Want With Seurat
chenyenchung/smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config
chenyenchung/Tiny_tools
Scripts for recurring chores