VEO-IBD Gene-Level Report Generator
genereporter automatically generates an analysis and visualization of the gene of interest. Across three different areas—cell type specific, gene set enrichment analysis, and sample (patient) specific—genereporter can help researchers quickly access and understand scRNA-seq data easily, which usually is a heavily computational task. However, genereporter is also built to be customizable for users that wish to dive into the code.
The documentation includes sample automatic pipelines as well as the API.
Installing genereporter is straight forward—just clone the repository and install the package using pip.
First, clone the github repository.
$ git clone https://github.com/chickaroo/genereporter
Next, you might want to make a conda environment to install the package in.
$ conda create -n genereporter python=3.11
$ conda activate genereporter
Then, navigate to the directory and install the package using pip.
$ cd genereporter
$ pip install .
This will install the package and all of its dependencies using pip.