chjp's Stars
MariaNattestad/Assemblytics_web
Deprecated in favor of main Assemblytics repo, containing both web and CLI versions.
mahulchak/quickmerge
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
pejvan/Algorithms-for-DNA-Sequencing
Coursera MOOC Algorithms for DNA Sequencing by Ben Langmead, PhD, Jacob Pritt
jts/nanopolish
Signal-level algorithms for MinION data
pb-sliang/TAP
vgteam/vg
tools for working with genome variation graphs
bcgsc/SSAKE
🍶 Genome assembly with short sequence reads
seandavi/GFFutils
Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
vibansal/hapcut
program for haplotype phasing from sequence reads and related tools
philc/vimium
The hacker's browser.
soedinglab/hh-suite
Remote protein homology detection suite.
yangyangwithgnu/use_vim_as_ide
use vim as IDE
adpolicarpo/SCRAG
Strict CoRe and Accessory Genome - scripts developed during master's thesis in Bioinformatics
PacificBiosciences/DevNet
The DevNet project on github stores the PacBio DevNet website.
xuyk/Rosalind
Solutions to Rosalind Bioinformatics Problems
kuleshov/ProbHap
Probabilistic single-individual haplotyping
Trinotate/Trinotate
Trinotate source code
nvbn/thefuck
Magnificent app which corrects your previous console command.
aquaskyline/SOAPdenovo2
Next generation sequencing reads de novo assembler.
chrishah/MITObim
MITObim - mitochondrial baiting and iterative mapping
ryanlayer/gqt
A genotype query interface.
ihh/gfftools
Perl scripts for working with the GFF format
homopolymer/PyroTools
A kit of tools developed in our group, including PyroHMMsnp, PyroHMMvar, GraphReAlign, etc
steuernb/NLR-Parser
Annotation Pipeline for NLR genes
andyrimmer/Platypus
Platypus Variant Caller
lh3/fermi
A WGS de novo assembler based on the FMD-index for large genomes
EVidenceModeler/EVidenceModeler.github.io
web documentation for EVM
EVidenceModeler/EVidenceModeler
source code for EVM
vim-perl/vim-perl
Support for Perl 5 in Vim
junegunn/vim-plug
:hibiscus: Minimalist Vim Plugin Manager