chjp

chjp's Stars

• bluenote-1577/skani

  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

  Language:Rust1569

• vanheeringen-lab/genomepy

  genes and genomes at your fingertips

  Language:Python37036

• colab-db/colab-db.github.io

  Repository of Jupyter Notebooks on Colab, Binder and Huggingface for Bio, Chemistry and Physics

  Language:Vue1411

• openvax/neoantigen-vaccine-pipeline

  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

  Language:Jupyter Notebook7324

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.3k444

• andreashoek/wasp

  Web-Accessible Single Cell RNA-Seq Processing Platform

  Language:R61

• combiz/scFlow

  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

  Language:R5314

• pachterlab/gget

  🧬 gget enables efficient querying of genomic reference databases

  Language:Python89671

• fengdu78/Coursera-ML-AndrewNg-Notes

  吴恩达老师的机器学习课程个人笔记

  Language:HTML31.1k10.5k

• MachineLearningLifeScience/meaningful-protein-representations

  Language:Jupyter Notebook1029

• fulcrumgenomics/python-snakemake-template

  A template repository for Snakemake pipepline(s) and a python command-line toolkit.

  Language:Python26

• snakemake-workflows/docs

  Documentation of the Snakemake-Workflows project

  15124

• kyclark/biofx_python

  Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

  Language:Python191525

• NCBI-Hackathons/Metatranscriptomics_Pilot

  A Pilot Project for Read Counts, Novel Transcripts and Population Level Functions in Metatranscriptomes

  Language:Jupyter Notebook22

• jalvesaq/Nvim-R

  Vim plugin to work with R

  Language:Vim Script948124

• nearinj/Comparison_of_DA_microbiome_methods

  Language:R5319

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python31474

• BGI-flexlab/SOAPTyping

  HLA typing for Sanger Based Test

  Language:C++137

• MPIIB-Department-TFMeyer/Iftekhar_Colibactin

  Language:HTML2

• broadinstitute/RNA_MUTECT_1.0-1

  Language:Shell369

• functional-dark-side/agnostos-wf

  Language:R4315

• vanheeringen-lab/seq2science

  Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

  Language:Python15026

• alyssafrazee/polyester

  Bioconductor package "polyester", devel version. RNA-seq read simulator.

  Language:R8951

• kshedden/statswpy

  Materials for Statswpy course

  Language:Jupyter Notebook214

• ahmedbahaaeldin/From-0-to-Research-Scientist-resources-guide

  Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.

  7.4k1k

• effiken/Maier_et_al_nature_2020

  This repository contains scripts used for analysis and figure generation in Maier, B., Leader, A.M., Chen, S.T. et al. A conserved dendritic-cell regulatory program limits antitumour immunity. Nature 580, 257–262 (2020). https://doi.org/10.1038/s41586-020-2134-y

  Language:R1311

• thorplab/Macrophage-Efferocytosis-Single-Cell

  Single-Cell RNA Sequencing Distinguishes Heterogenous Transcriptional Signatures in Macrophages during Efferocytosis

  Language:R62

• carmonalab/ProjecTILs

  Interpretation of cell states using reference single-cell maps

  Language:R23427

• bhattlab/kraken2_classification

  Snakemake workflow for metagenomic classification with Kraken2

  Language:Python6516

• PawseySC/singularity-containers

  Webinars&Tutorial on Containers on HPC and Cloud with Singularity

  Language:Python266