testrun error: AttributeError: module '__main__' has no attribute '__spec__'

[rfour92]

Hello,

thank you for this amazing tool. I am trying to perform a testrun after installing checkM2 1.0.2 as specified in the installation guide.
I am getting this error. can you kindly tell me how to get it fixed.

please note I am using apple silicon + rosetta, so I install tools as osx-64, not sure if it's important to disclose this information though.

here is the full error message I get:

(checkm2-env-2) ra@ checkm2 % checkm2 testrun /Users/ra/miniconda3/envs/checkm2-env-2/bin/checkm2:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html __import__('pkg_resources').run_script('CheckM2==1.0.2', 'checkm2') [05/26/2024 06:07:36 AM] INFO: Test run: Running quality prediction workflow on test genomes with 1 threads. [05/26/2024 06:07:36 AM] INFO: Running checksum on test genomes. [05/26/2024 06:07:36 AM] INFO: Checksum successful. [05/26/2024 06:07:37 AM] INFO: Calling genes in 3 bins with 1 threads: Traceback (most recent call last): File "/Users/ra/miniconda3/envs/checkm2-env-2/bin/checkm2", line 4, in <module> __import__('pkg_resources').run_script('CheckM2==1.0.2', 'checkm2') File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/site-packages/pkg_resources/__init__.py", line 680, in run_script self.require(requires)[0].run_script(script_name, ns) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1516, in run_script exec(code, namespace, namespace) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/site-packages/CheckM2-1.0.2-py3.8.egg/EGG-INFO/scripts/checkm2", line 267, in <module> predictor.prediction_wf(False, 'auto', False, False, False) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/site-packages/CheckM2-1.0.2-py3.8.egg/checkm2/predictQuality.py", line 103, in prediction_wf GC, totalContigs, maxContigLen = self.__run_prodigal(ttable) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/site-packages/CheckM2-1.0.2-py3.8.egg/checkm2/predictQuality.py", line 386, in __run_prodigal used_ttables = mp.Manager().dict() File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/context.py", line 57, in Manager m.start() File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/managers.py", line 579, in start self._process.start() File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/process.py", line 121, in start self._popen = self._Popen(self) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/context.py", line 284, in _Popen return Popen(process_obj) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 32, in __init__ super().__init__(process_obj) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/popen_fork.py", line 19, in __init__ self._launch(process_obj) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/popen_spawn_posix.py", line 42, in _launch prep_data = spawn.get_preparation_data(process_obj._name) File "/Users/ra/miniconda3/envs/checkm2-env-2/lib/python3.8/multiprocessing/spawn.py", line 183, in get_preparation_data main_mod_name = getattr(main_module.__spec__, "name", None) AttributeError: module '__main__' has no attribute '__spec__'

Thank you for your time :)